Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:119858340-120028355

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rptor 11 119602905 to 119899576 296671 + protein coding gene regulatory associated protein of MTOR, complex 1
Tssr112239 11 119863410 to 119863457 47 - TSS region transcription start site region 112239
Tssr106257 11 119876004 to 119876017 13 + TSS region transcription start site region 106257
Gm39485 11 119908597 to 119913458 4861 - lncRNA gene predicted gene, 39485
Cpgi4277 11 119913252 to 119914525 1273 CpG island CpG island 4277
Tssr106258 11 119913423 to 119913434 11 + TSS region transcription start site region 106258
Chmp6 11 119913446 to 119919552 6106 + protein coding gene charged multivesicular body protein 6
Tssr106259 11 119913802 to 119913854 52 + TSS region transcription start site region 106259
Tssr106260 11 119916303 to 119916337 34 + TSS region transcription start site region 106260
Tssr106261 11 119916647 to 119916683 36 + TSS region transcription start site region 106261
Tssr3753 11 119916696 to 119916707 11 + TSS region transcription start site region 3753
Tssr112240 11 119917181 to 119917206 25 - TSS region transcription start site region 112240
Cpgi4278 11 119928332 to 119928630 298 CpG island CpG island 4278
Tssr106262 11 119928601 to 119928614 13 + TSS region transcription start site region 106262
2900060N18Rik 11 119933009 to 119933534 525 unclassified gene RIKEN cDNA 2900060N18 gene
Gm11767 11 119935803 to 119942698 6895 - antisense lncRNA gene predicted gene 11767
Tssr112241 11 119937427 to 119937444 17 - TSS region transcription start site region 112241
Tssr112242 11 119937446 to 119937466 20 - TSS region transcription start site region 112242
Tssr112243 11 119937807 to 119937818 11 - TSS region transcription start site region 112243
Gm11766 11 119938511 to 119942074 3563 + lincRNA gene predicted gene 11766
Cpgi4279 11 119942160 to 119943866 1706 CpG island CpG island 4279
Tssr112244 11 119942662 to 119942676 14 - TSS region transcription start site region 112244
Baiap2 11 119942768 to 120006782 64014 + protein coding gene brain-specific angiogenesis inhibitor 1-associated protein 2
Tssr106263 11 119943082 to 119943099 17 + TSS region transcription start site region 106263
Tssr112245 11 119943340 to 119943355 15 - TSS region transcription start site region 112245
Tssr106264 11 119996980 to 119997006 26 + TSS region transcription start site region 106264
Tssr106265 11 119999108 to 119999124 16 + TSS region transcription start site region 106265
Aatk 11 120007313 to 120047167 39854 - protein coding gene apoptosis-associated tyrosine kinase
Tssr106266 11 120007322 to 120007324 2 + TSS region transcription start site region 106266
Cpgi4280 11 120009868 to 120010106 238 CpG island CpG island 4280
Cpgi4281 11 120011700 to 120012399 699 CpG island CpG island 4281
Cpgi4282 11 120013278 to 120013735 457 CpG island CpG island 4282
Tssr3754 11 120014387 to 120014400 13 - TSS region transcription start site region 3754
Mir338 11 120014765 to 120014862 97 - miRNA gene microRNA 338
Mir3065 11 120014767 to 120014853 86 + miRNA gene microRNA 3065
Tssr112246 11 120017058 to 120017160 102 - TSS region transcription start site region 112246
Tssr112247 11 120017176 to 120017186 10 - TSS region transcription start site region 112247
Tssr112248 11 120017247 to 120017286 39 - TSS region transcription start site region 112248
Tssr112249 11 120020127 to 120020140 13 - TSS region transcription start site region 112249
Tssr112250 11 120020143 to 120020150 7 - TSS region transcription start site region 112250
Tssr112251 11 120020160 to 120020190 30 - TSS region transcription start site region 112251
Tssr112252 11 120020234 to 120020237 3 - TSS region transcription start site region 112252
Cpgi4283 11 120022862 to 120023083 221 CpG island CpG island 4283