Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:116813535-117056552

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61 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mxra7 11 116803400 to 116828068 24668 - protein coding gene matrix-remodelling associated 7
Tssr111986 11 116816213 to 116816247 34 - TSS region transcription start site region 111986
Cpgi4195 11 116827079 to 116828508 1429 CpG island CpG island 4195
Tssr111987 11 116828000 to 116828071 71 - TSS region transcription start site region 111987
Jmjd6 11 116837432 to 116843449 6017 - protein coding gene jumonji domain containing 6
Gm27401 11 116839794 to 116839966 172 - unclassified non-coding RNA gene predicted gene, 27401
Cpgi4196 11 116842464 to 116844100 1636 CpG island CpG island 4196
Tssr111988 11 116842726 to 116842743 17 - TSS region transcription start site region 111988
Tssr111989 11 116842819 to 116842828 9 - TSS region transcription start site region 111989
Tssr111990 11 116842831 to 116842846 15 - TSS region transcription start site region 111990
Tssr111991 11 116842848 to 116842869 21 - TSS region transcription start site region 111991
Tssr111992 11 116842875 to 116842893 18 - TSS region transcription start site region 111992
Tssr111993 11 116843124 to 116843134 10 - TSS region transcription start site region 111993
Tssr111994 11 116843151 to 116843162 11 - TSS region transcription start site region 111994
Tssr111995 11 116843163 to 116843232 69 - TSS region transcription start site region 111995
Tssr111996 11 116843285 to 116843299 14 - TSS region transcription start site region 111996
Tssr111997 11 116843312 to 116843386 74 - TSS region transcription start site region 111997
Tssr111998 11 116843455 to 116843505 50 - TSS region transcription start site region 111998
Mettl23 11 116843515 to 116849740 6225 + protein coding gene methyltransferase like 23
Tssr105996 11 116843519 to 116843569 50 + TSS region transcription start site region 105996
Tssr105997 11 116843572 to 116843603 31 + TSS region transcription start site region 105997
Tssr105998 11 116843651 to 116843677 26 + TSS region transcription start site region 105998
Tssr105999 11 116843707 to 116843730 23 + TSS region transcription start site region 105999
Srsf2 11 116849901 to 116853094 3193 - protein coding gene serine/arginine-rich splicing factor 2
Tssr111999 11 116850621 to 116850648 27 - TSS region transcription start site region 111999
Tssr112000 11 116850911 to 116850931 20 - TSS region transcription start site region 112000
Tssr112001 11 116851190 to 116851194 4 - TSS region transcription start site region 112001
Tssr112002 11 116851258 to 116851271 13 - TSS region transcription start site region 112002
Tssr112003 11 116851279 to 116851315 36 - TSS region transcription start site region 112003
Tssr112004 11 116851444 to 116851475 31 - TSS region transcription start site region 112004
Cpgi4197 11 116851966 to 116854108 2142 CpG island CpG island 4197
Tssr112005 11 116852113 to 116852153 40 - TSS region transcription start site region 112005
Tssr112006 11 116852158 to 116852192 34 - TSS region transcription start site region 112006
Tssr106000 11 116852184 to 116852220 36 + TSS region transcription start site region 106000
Tssr112007 11 116852202 to 116852258 56 - TSS region transcription start site region 112007
Tssr112008 11 116852323 to 116852364 41 - TSS region transcription start site region 112008
Tssr112009 11 116852428 to 116852456 28 - TSS region transcription start site region 112009
Mfsd11 11 116852440 to 116875635 23195 + protein coding gene major facilitator superfamily domain containing 11
Tssr106001 11 116852485 to 116852574 89 + TSS region transcription start site region 106001
Tssr112010 11 116853083 to 116853099 16 - TSS region transcription start site region 112010
Tssr106002 11 116853254 to 116853272 18 + TSS region transcription start site region 106002
Tssr106003 11 116853457 to 116853481 24 + TSS region transcription start site region 106003
Tssr106004 11 116853752 to 116853836 84 + TSS region transcription start site region 106004
Tssr106005 11 116868342 to 116868437 95 + TSS region transcription start site region 106005
Cpgi4198 11 116918172 to 116919886 1714 CpG island CpG island 4198
Tssr106006 11 116918794 to 116918803 9 + TSS region transcription start site region 106006
Tssr106007 11 116918826 to 116918837 11 + TSS region transcription start site region 106007
Tssr106008 11 116918844 to 116918888 44 + TSS region transcription start site region 106008
Mgat5b 11 116918863 to 116986948 68085 + protein coding gene mannoside acetylglucosaminyltransferase 5, isoenzyme B
Tssr106009 11 116918901 to 116918908 7 + TSS region transcription start site region 106009
Gm33829 11 116933535 to 116936552 3017 + lncRNA gene predicted gene, 33829
Tssr106010 11 116966731 to 116966735 4 + TSS region transcription start site region 106010
Cpgi4199 11 116968235 to 116968579 344 CpG island CpG island 4199
Cpgi4200 11 116968911 to 116969386 475 CpG island CpG island 4200
Cpgi4201 11 117028151 to 117028483 332 CpG island CpG island 4201
D11Dcr48 11 117030580 to 117030679 99 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 48
Gm11728 11 117035078 to 117040193 5115 - lincRNA gene predicted gene 11728
Tssr112011 11 117040168 to 117040180 12 - TSS region transcription start site region 112011
Tssr112012 11 117040182 to 117040200 18 - TSS region transcription start site region 112012
Tssr112013 11 117040226 to 117040235 9 - TSS region transcription start site region 112013
Tssr112014 11 117040315 to 117040325 10 - TSS region transcription start site region 112014