Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:116013000-117643071

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495 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi4157 11 116012245 to 116013069 824 CpG island CpG island 4157
Tssr111811 11 116020559 to 116020563 4 - TSS region transcription start site region 111811
Tssr3735 11 116021247 to 116021251 4 - TSS region transcription start site region 3735
H3f3b 11 116021961 to 116025450 3489 - protein coding gene H3 histone, family 3B
Tssr111812 11 116022648 to 116022677 29 - TSS region transcription start site region 111812
Tssr111813 11 116022836 to 116022850 14 - TSS region transcription start site region 111813
Cpgi4158 11 116023584 to 116024761 1177 CpG island CpG island 4158
Tssr111814 11 116023964 to 116023977 13 - TSS region transcription start site region 111814
Tssr3736 11 116024058 to 116024082 24 - TSS region transcription start site region 3736
Tssr111815 11 116024085 to 116024114 29 - TSS region transcription start site region 111815
Tssr111816 11 116024489 to 116024511 22 - TSS region transcription start site region 111816
Tssr111817 11 116027391 to 116027401 10 - TSS region transcription start site region 111817
Tssr111818 11 116027849 to 116027858 9 - TSS region transcription start site region 111818
Tssr111819 11 116027934 to 116027945 11 - TSS region transcription start site region 111819
Tssr111820 11 116027961 to 116027978 17 - TSS region transcription start site region 111820
Cpgi4159 11 116029936 to 116031097 1161 CpG island CpG island 4159
Tssr111821 11 116030082 to 116030121 39 - TSS region transcription start site region 111821
Tssr105942 11 116030304 to 116030385 81 + TSS region transcription start site region 105942
Unk 11 116030322 to 116061214 30892 + protein coding gene unkempt family zinc finger
Tssr105943 11 116030665 to 116030698 33 + TSS region transcription start site region 105943
D11Wsu173e 11 116036591 to 116036816 225 DNA segment DNA segment, Chr 11, Wayne State University 173, expressed
Gm38482 11 116039988 to 116041400 1412 + lncRNA gene predicted gene, 38482
Unc13d 11 116062095 to 116077961 15866 - protein coding gene unc-13 homolog D
Tssr111822 11 116076986 to 116077027 41 - TSS region transcription start site region 111822
Tssr111823 11 116077047 to 116077068 21 - TSS region transcription start site region 111823
Tssr111824 11 116077470 to 116077511 41 - TSS region transcription start site region 111824
Tssr111825 11 116077517 to 116077534 17 - TSS region transcription start site region 111825
Tssr111826 11 116077562 to 116077596 34 - TSS region transcription start site region 111826
Tssr111827 11 116077606 to 116077632 26 - TSS region transcription start site region 111827
Tssr111828 11 116077756 to 116077797 41 - TSS region transcription start site region 111828
Tssr111829 11 116077927 to 116077952 25 - TSS region transcription start site region 111829
Tssr111830 11 116077954 to 116077979 25 - TSS region transcription start site region 111830
Cpgi4160 11 116078309 to 116078523 214 CpG island CpG island 4160
Tssr111831 11 116078426 to 116078464 38 - TSS region transcription start site region 111831
Wbp2 11 116078573 to 116086995 8422 - protein coding gene WW domain binding protein 2
Tssr111832 11 116079146 to 116079157 11 - TSS region transcription start site region 111832
Tssr111833 11 116079233 to 116079244 11 - TSS region transcription start site region 111833
Tssr111834 11 116079249 to 116079292 43 - TSS region transcription start site region 111834
Tssr111835 11 116079321 to 116079335 14 - TSS region transcription start site region 111835
Tssr111836 11 116079354 to 116079383 29 - TSS region transcription start site region 111836
Tssr111837 11 116079439 to 116079467 28 - TSS region transcription start site region 111837
Tssr111838 11 116079554 to 116079602 48 - TSS region transcription start site region 111838
Tssr111839 11 116079766 to 116079785 19 - TSS region transcription start site region 111839
Tssr111840 11 116079788 to 116079799 11 - TSS region transcription start site region 111840
Tssr111841 11 116080263 to 116080274 11 - TSS region transcription start site region 111841
Tssr111842 11 116080280 to 116080316 36 - TSS region transcription start site region 111842
Tssr111843 11 116080341 to 116080353 12 - TSS region transcription start site region 111843
Tssr105944 11 116080606 to 116080621 15 + TSS region transcription start site region 105944
Tssr111844 11 116080616 to 116080628 12 - TSS region transcription start site region 111844
Tssr111845 11 116080663 to 116080675 12 - TSS region transcription start site region 111845
Cpgi4161 11 116086792 to 116087772 980 CpG island CpG island 4161
Tssr111846 11 116086929 to 116086979 50 - TSS region transcription start site region 111846
Tssr105945 11 116092196 to 116092200 4 + TSS region transcription start site region 105945
Trim47 11 116105750 to 116110235 4485 - protein coding gene tripartite motif-containing 47
Cpgi4162 11 116106158 to 116106535 377 CpG island CpG island 4162
Cpgi4163 11 116107900 to 116108361 461 CpG island CpG island 4163
Cpgi4164 11 116108842 to 116109136 294 CpG island CpG island 4164
Tssr105946 11 116108918 to 116108928 10 + TSS region transcription start site region 105946
Cpgi4165 11 116109316 to 116110659 1343 CpG island CpG island 4165
Tssr111847 11 116110185 to 116110206 21 - TSS region transcription start site region 111847
Tssr111848 11 116110211 to 116110259 48 - TSS region transcription start site region 111848
Tssr111849 11 116110266 to 116110283 17 - TSS region transcription start site region 111849
Tssr105947 11 116110327 to 116110349 22 + TSS region transcription start site region 105947
Tssr111850 11 116110406 to 116110417 11 - TSS region transcription start site region 111850
Tssr111851 11 116110717 to 116110739 22 - TSS region transcription start site region 111851
Trim65 11 116124708 to 116131260 6552 - protein coding gene tripartite motif-containing 65
Tssr111852 11 116125326 to 116125331 5 - TSS region transcription start site region 111852
Cpgi4166 11 116130259 to 116131225 966 CpG island CpG island 4166
Tssr111853 11 116131001 to 116131041 40 - TSS region transcription start site region 111853
Tssr111854 11 116131053 to 116131062 9 - TSS region transcription start site region 111854
Tssr111855 11 116131073 to 116131100 27 - TSS region transcription start site region 111855
Tssr111856 11 116131110 to 116131131 21 - TSS region transcription start site region 111856
Mrpl38 11 116131817 to 116138868 7051 - protein coding gene mitochondrial ribosomal protein L38
Tssr111857 11 116132520 to 116132540 20 - TSS region transcription start site region 111857
Tssr111858 11 116132573 to 116132584 11 - TSS region transcription start site region 111858
Tssr111859 11 116132877 to 116132912 35 - TSS region transcription start site region 111859
Cpgi4167 11 116138220 to 116139096 876 CpG island CpG island 4167
Tssr111860 11 116138775 to 116138788 13 - TSS region transcription start site region 111860
Tssr111861 11 116138789 to 116138848 59 - TSS region transcription start site region 111861
Tssr111862 11 116138850 to 116138859 9 - TSS region transcription start site region 111862
Tssr111863 11 116138862 to 116138873 11 - TSS region transcription start site region 111863
Fbf1 11 116142285 to 116168166 25881 - protein coding gene Fas (TNFRSF6) binding factor 1
Cpgi4168 11 116146476 to 116146670 194 CpG island CpG island 4168
Cpgi4169 11 116148939 to 116149201 262 CpG island CpG island 4169
Gm26413 11 116163910 to 116164035 125 - snoRNA gene predicted gene, 26413
Cpgi4170 11 116167710 to 116168507 797 CpG island CpG island 4170
Tssr111864 11 116168138 to 116168205 67 - TSS region transcription start site region 111864
Tssr111865 11 116168295 to 116168306 11 - TSS region transcription start site region 111865
Acox1 11 116171888 to 116199045 27157 - protein coding gene acyl-Coenzyme A oxidase 1, palmitoyl
Tssr111866 11 116173085 to 116173103 18 - TSS region transcription start site region 111866
Tssr111867 11 116173130 to 116173169 39 - TSS region transcription start site region 111867
Tssr111868 11 116173232 to 116173258 26 - TSS region transcription start site region 111868
Tssr111869 11 116173276 to 116173351 75 - TSS region transcription start site region 111869
Tssr111870 11 116174424 to 116174445 21 - TSS region transcription start site region 111870
Tssr111871 11 116174472 to 116174486 14 - TSS region transcription start site region 111871
Tssr111872 11 116174703 to 116174721 18 - TSS region transcription start site region 111872
Tssr111873 11 116174731 to 116174794 63 - TSS region transcription start site region 111873
Tssr111874 11 116174817 to 116174821 4 - TSS region transcription start site region 111874
Tssr111875 11 116174854 to 116174867 13 - TSS region transcription start site region 111875
Tssr111876 11 116175159 to 116175169 10 - TSS region transcription start site region 111876
Tssr111877 11 116175188 to 116175195 7 - TSS region transcription start site region 111877
Tssr111878 11 116175245 to 116175261 16 - TSS region transcription start site region 111878
Tssr111879 11 116178169 to 116178181 12 - TSS region transcription start site region 111879
Tssr111880 11 116178275 to 116178306 31 - TSS region transcription start site region 111880
D11Dcr39 11 116186707 to 116186808 101 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 39
Tssr111881 11 116186895 to 116186899 4 - TSS region transcription start site region 111881
Tssr105948 11 116189414 to 116189460 46 + TSS region transcription start site region 105948
Tssr111882 11 116189542 to 116189550 8 - TSS region transcription start site region 111882
Tssr111883 11 116193538 to 116193561 23 - TSS region transcription start site region 111883
Tssr111884 11 116197987 to 116197997 10 - TSS region transcription start site region 111884
Tssr111885 11 116198254 to 116198269 15 - TSS region transcription start site region 111885
Tssr111886 11 116198332 to 116198347 15 - TSS region transcription start site region 111886
Cpgi4171 11 116198400 to 116199404 1004 CpG island CpG island 4171
Tssr111887 11 116198659 to 116198663 4 - TSS region transcription start site region 111887
Tssr111888 11 116198673 to 116198677 4 - TSS region transcription start site region 111888
Tssr111889 11 116198701 to 116198836 135 - TSS region transcription start site region 111889
Tssr105949 11 116198853 to 116198903 50 + TSS region transcription start site region 105949
Ten1 11 116198855 to 116215318 16463 + protein coding gene TEN1 telomerase capping complex subunit
Tssr111890 11 116199006 to 116199037 31 - TSS region transcription start site region 111890
Tssr111891 11 116199040 to 116199090 50 - TSS region transcription start site region 111891
Tssr111892 11 116206477 to 116206484 7 - TSS region transcription start site region 111892
Tssr105950 11 116210963 to 116211006 43 + TSS region transcription start site region 105950
Cdk3 11 116216003 to 116220287 4284 + polymorphic pseudogene cyclin-dependent kinase 3
Evpl 11 116220559 to 116238077 17518 - protein coding gene envoplakin
Cpgi4172 11 116221819 to 116223150 1331 CpG island CpG island 4172
Gm33250 11 116225260 to 116239239 13979 + lncRNA gene predicted gene, 33250
Cpgi4173 11 116232652 to 116232999 347 CpG island CpG island 4173
Tssr105951 11 116232711 to 116232728 17 + TSS region transcription start site region 105951
Cpgi4174 11 116237861 to 116238373 512 CpG island CpG island 4174
Tssr111893 11 116238083 to 116238097 14 - TSS region transcription start site region 111893
Srp68 11 116245166 to 116274217 29051 - protein coding gene signal recognition particle 68
Tssr111894 11 116247198 to 116247216 18 - TSS region transcription start site region 111894
Tssr111895 11 116262891 to 116262923 32 - TSS region transcription start site region 111895
Tssr111896 11 116273335 to 116273342 7 - TSS region transcription start site region 111896
Cpgi4175 11 116273507 to 116274570 1063 CpG island CpG island 4175
Tssr111897 11 116274102 to 116274138 36 - TSS region transcription start site region 111897
Tssr105952 11 116274164 to 116274183 19 + TSS region transcription start site region 105952
Tssr111898 11 116274197 to 116274208 11 - TSS region transcription start site region 111898
Galr2 11 116280939 to 116283938 2999 + protein coding gene galanin receptor 2
Cpgi4176 11 116281174 to 116282138 964 CpG island CpG island 4176
Cpgi4177 11 116282748 to 116283730 982 CpG island CpG island 4177
Exoc7 11 116287998 to 116306749 18751 - protein coding gene exocyst complex component 7
Tssr111899 11 116292475 to 116292476 1 - TSS region transcription start site region 111899
Tssr111900 11 116300320 to 116300337 17 - TSS region transcription start site region 111900
Cpgi4178 11 116306103 to 116307209 1106 CpG island CpG island 4178
Tssr111901 11 116306675 to 116306691 16 - TSS region transcription start site region 111901
Tssr111902 11 116306696 to 116306750 54 - TSS region transcription start site region 111902
Gm26730 11 116306864 to 116309510 2646 + lincRNA gene predicted gene, 26730
Tssr111903 11 116307168 to 116307190 22 - TSS region transcription start site region 111903
Cpgi4179 11 116318990 to 116319619 629 CpG island CpG island 4179
n-R5s74 11 116326602 to 116326717 115 - rRNA gene nuclear encoded rRNA 5S 74
Tssr111904 11 116329427 to 116329440 13 - TSS region transcription start site region 111904
Tssr105953 11 116330475 to 116330490 15 + TSS region transcription start site region 105953
Foxj1 11 116330704 to 116335399 4695 - protein coding gene forkhead box J1
Cpgi4180 11 116333935 to 116336041 2106 CpG island CpG island 4180
Tssr111905 11 116334147 to 116334179 32 - TSS region transcription start site region 111905
Tssr111906 11 116334208 to 116334234 26 - TSS region transcription start site region 111906
Tssr111907 11 116335350 to 116335365 15 - TSS region transcription start site region 111907
Tssr111908 11 116335384 to 116335399 15 - TSS region transcription start site region 111908
Tssr111909 11 116335400 to 116335415 15 - TSS region transcription start site region 111909
Rnf157 11 116336353 to 116413032 76679 - protein coding gene ring finger protein 157
Tssr111910 11 116359060 to 116359103 43 - TSS region transcription start site region 111910
Tssr111911 11 116359105 to 116359126 21 - TSS region transcription start site region 111911
Tssr3737 11 116359268 to 116359282 14 - TSS region transcription start site region 3737
Tssr111912 11 116359292 to 116359349 57 - TSS region transcription start site region 111912
Tssr111913 11 116359351 to 116359374 23 - TSS region transcription start site region 111913
Tssr111914 11 116359426 to 116359444 18 - TSS region transcription start site region 111914
Tssr111915 11 116359460 to 116359478 18 - TSS region transcription start site region 111915
Tssr111916 11 116359480 to 116359510 30 - TSS region transcription start site region 111916
Tssr111917 11 116359989 to 116360003 14 - TSS region transcription start site region 111917
D11Dcr30 11 116363355 to 116363455 100 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 30
D11Mit203 11 116363361 to 116363500 139 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 203
Alcw8 11 116363361 to 116363500 139 QTL alcohol withdrawal 8
D11Mit203.1 11 116363482 to 116363636 154 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 203.1
Tssr105954 11 116382705 to 116382717 12 + TSS region transcription start site region 105954
Rps11-ps2 11 116382750 to 116383205 455 + pseudogene ribosomal protein S11, pseudogene 2
Cpgi4181 11 116412127 to 116413594 1467 CpG island CpG island 4181
Tssr111918 11 116412965 to 116413000 35 - TSS region transcription start site region 111918
Tssr111919 11 116413015 to 116413069 54 - TSS region transcription start site region 111919
n-TAagc3 11 116415979 to 116416051 72 - tRNA gene nuclear encoded tRNA alanine 3 (anticodon AGC)
Tssr111920 11 116426028 to 116426062 34 - TSS region transcription start site region 111920
Tssr111921 11 116429486 to 116429529 43 - TSS region transcription start site region 111921
Cpgi4182 11 116433728 to 116435173 1445 CpG island CpG island 4182
Tssr111922 11 116433792 to 116433822 30 - TSS region transcription start site region 111922
Tssr105955 11 116434067 to 116434078 11 + TSS region transcription start site region 105955
Tssr105956 11 116434087 to 116434106 19 + TSS region transcription start site region 105956
Ubald2 11 116434094 to 116439077 4983 + protein coding gene UBA-like domain containing 2
Tssr105957 11 116434194 to 116434227 33 + TSS region transcription start site region 105957
Tssr105958 11 116434232 to 116434254 22 + TSS region transcription start site region 105958
Tssr105959 11 116436972 to 116437020 48 + TSS region transcription start site region 105959
Qrich2 11 116441325 to 116466241 24916 - protein coding gene glutamine rich 2
Cpgi4183 11 116446434 to 116446749 315 CpG island CpG island 4183
Tssr111923 11 116448394 to 116448406 12 - TSS region transcription start site region 111923
Tssr111924 11 116459930 to 116459947 17 - TSS region transcription start site region 111924
Tssr111925 11 116459957 to 116459972 15 - TSS region transcription start site region 111925
Cpgi4184 11 116466003 to 116466437 434 CpG island CpG island 4184
Tssr111926 11 116466198 to 116466202 4 - TSS region transcription start site region 111926
Tssr111927 11 116466219 to 116466241 22 - TSS region transcription start site region 111927
Tssr111928 11 116466249 to 116466251 2 - TSS region transcription start site region 111928
Gm11739 11 116466319 to 116474274 7955 + antisense lncRNA gene predicted gene 11739