Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:115377981-115448053

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31 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi4128 11 115381454 to 115382689 1235 CpG island CpG island 4128
Tssr105858 11 115381867 to 115381899 32 + TSS region transcription start site region 105858
Tssr105859 11 115381906 to 115381933 27 + TSS region transcription start site region 105859
Cdr2l 11 115381916 to 115396132 14216 + protein coding gene cerebellar degeneration-related protein 2-like
Cpgi4129 11 115393355 to 115394205 850 CpG island CpG island 4129
Tssr105860 11 115394636 to 115394642 6 + TSS region transcription start site region 105860
Gm32013 11 115397170 to 115401253 4083 - lncRNA gene predicted gene, 32013
Cpgi4130 11 115403594 to 115404300 706 CpG island CpG island 4130
Tssr105861 11 115403734 to 115403777 43 + TSS region transcription start site region 105861
Mrpl58 11 115403739 to 115410919 7180 + protein coding gene mitochondrial ribosomal protein L58
Ict1os 11 115406586 to 115408314 1728 - antisense lncRNA gene immature colon carcinoma transcript 1, opposite strand
Cpgi4131 11 115412709 to 115413859 1150 CpG island CpG island 4131
Tssr105862 11 115412820 to 115412834 14 + TSS region transcription start site region 105862
n-TRcct5 11 115412981 to 115413053 72 + tRNA gene nuclear encoded tRNA arginine 5 (anticodon CCT)
n-TRcct3 11 115413304 to 115413376 72 - tRNA gene nuclear encoded tRNA arginine 3 (anticodon CCT)
n-TRtcg4 11 115413779 to 115413851 72 + tRNA gene nuclear encoded tRNA arginine 4 (anticodon TCG)
Atp5h 11 115415691 to 115419919 4228 - protein coding gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D
Tssr105863 11 115419316 to 115419348 32 + TSS region transcription start site region 105863
Cpgi4132 11 115419675 to 115420832 1157 CpG island CpG island 4132
Tssr111751 11 115419891 to 115419901 10 - TSS region transcription start site region 111751
Tssr111752 11 115419932 to 115419953 21 - TSS region transcription start site region 111752
Tssr105864 11 115420059 to 115420119 60 + TSS region transcription start site region 105864
Kctd2 11 115420128 to 115431274 11146 + protein coding gene potassium channel tetramerisation domain containing 2
Tssr105865 11 115420138 to 115420164 26 + TSS region transcription start site region 105865
Tssr111753 11 115420456 to 115420516 60 - TSS region transcription start site region 111753
Cpgi4133 11 115436013 to 115436169 156 CpG island CpG island 4133
Tssr105866 11 115440515 to 115440524 9 + TSS region transcription start site region 105866
Tssr105867 11 115440540 to 115440554 14 + TSS region transcription start site region 105867
Trim80 11 115440545 to 115448268 7723 + protein coding gene tripartite motif-containing 80
Cpgi4134 11 115441493 to 115441782 289 CpG island CpG island 4134
Mir3968 11 115447961 to 115448060 99 - miRNA gene microRNA 3968