Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:113977138-114497153

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sdk2 11 113776374 to 114067046 290672 - protein coding gene sidekick cell adhesion molecule 2
Cpgi4085 11 114064837 to 114067609 2772 CpG island CpG island 4085
Tssr111657 11 114066174 to 114066188 14 - TSS region transcription start site region 111657
Tssr111658 11 114066986 to 114067064 78 - TSS region transcription start site region 111658
Tssr105769 11 114091404 to 114091413 9 + TSS region transcription start site region 105769
Tssr105770 11 114091429 to 114091443 14 + TSS region transcription start site region 105770
Tssr105771 11 114091474 to 114091515 41 + TSS region transcription start site region 105771
1700025D23Rik 11 114091803 to 114095325 3522 + lincRNA gene RIKEN cDNA 1700025D23 gene
D11Mit167 11 114093917 to 114094064 147 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 167
Cpgi4086 11 114168322 to 114168474 152 CpG island CpG island 4086
D11Mit302 11 114174336 to 114174450 114 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 302
1700001J04Rik 11 114185438 to 114186761 1323 - antisense lncRNA gene RIKEN cDNA 1700001J04 gene
Tssr111659 11 114185647 to 114185654 7 - TSS region transcription start site region 111659
Tssr111660 11 114186744 to 114186756 12 - TSS region transcription start site region 111660
1700092K14Rik 11 114198258 to 114199199 941 + lncRNA gene RIKEN cDNA 1700092K14 gene
Cpgi4087 11 114202407 to 114202806 399 CpG island CpG island 4087
Tssr111661 11 114217601 to 114217606 5 - TSS region transcription start site region 111661
Tssr105772 11 114217705 to 114217748 43 + TSS region transcription start site region 105772
Gm11690 11 114219239 to 114238502 19263 - lincRNA gene predicted gene 11690
D11Mit255 11 114223504 to 114223688 184 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 255
Tssr111662 11 114237138 to 114237153 15 - TSS region transcription start site region 111662
Tssr111663 11 114237207 to 114237213 6 - TSS region transcription start site region 111663
Tssr111664 11 114248322 to 114248347 25 - TSS region transcription start site region 111664
Gm11691 11 114251843 to 114253127 1284 + lincRNA gene predicted gene 11691
Tssr105773 11 114251876 to 114251887 11 + TSS region transcription start site region 105773
D11Dcr28 11 114267020 to 114267130 110 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 28
D11Mit253 11 114267052 to 114267131 79 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 253
Tmc1m2 11 114267131 to 56973201 -57293930 QTL Tmc1 modifier 2
Cpgi4088 11 114277778 to 114278086 308 CpG island CpG island 4088
Gm31318 11 114303822 to 114310026 6204 + lncRNA gene predicted gene, 31318
D11Mit292 11 114351743 to 114351988 245 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 292
Gm11692 11 114357129 to 114358261 1132 + pseudogene predicted gene 11692
4932435O22Rik 11 114413405 to 114448860 35455 - lincRNA gene RIKEN cDNA 4932435O22 gene
Cpgi4089 11 114423391 to 114423857 466 CpG island CpG island 4089
Gm31399 11 114423752 to 114434189 10437 + lncRNA gene predicted gene, 31399
Cpgi4090 11 114472488 to 114472728 240 CpG island CpG island 4090
Gm39471 11 114479909 to 114484619 4710 - lncRNA gene predicted gene, 39471
Gm39472 11 114489206 to 114504225 15019 + lncRNA gene predicted gene, 39472