Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:109805955-110385969

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
1700012B07Rik 11 109788266 to 109828079 39813 - protein coding gene RIKEN cDNA 1700012B07 gene
Tssr111581 11 109828021 to 109828028 7 - TSS region transcription start site region 111581
Tssr111582 11 109828036 to 109828065 29 - TSS region transcription start site region 111582
Tssr111583 11 109828066 to 109828070 4 - TSS region transcription start site region 111583
Tssr105704 11 109845828 to 109845838 10 + TSS region transcription start site region 105704
Tssr105705 11 109845864 to 109845870 6 + TSS region transcription start site region 105705
1700023C21Rik 11 109845878 to 109848476 2598 + lincRNA gene RIKEN cDNA 1700023C21 gene
Gm39444 11 109927805 to 109930588 2783 - lncRNA gene predicted gene, 39444
Abca8b 11 109932568 to 109995840 63272 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 8b
Tssr105706 11 109936307 to 109936318 11 + TSS region transcription start site region 105706
Gm11697 11 109936316 to 109938135 1819 + antisense lncRNA gene predicted gene 11697
Tssr111584 11 109986894 to 109986906 12 - TSS region transcription start site region 111584
Tssr111585 11 109987016 to 109987027 11 - TSS region transcription start site region 111585
Tssr111586 11 109995641 to 109995653 12 - TSS region transcription start site region 111586
Tssr111587 11 109995658 to 109995681 23 - TSS region transcription start site region 111587
Tssr111588 11 109995747 to 109995762 15 - TSS region transcription start site region 111588
Tssr111589 11 109995775 to 109995800 25 - TSS region transcription start site region 111589
Abca8a 11 110025634 to 110095978 70344 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 8a
Tssr111590 11 110079120 to 110079137 17 - TSS region transcription start site region 111590
Tssr111591 11 110095955 to 110095969 14 - TSS region transcription start site region 111591
Tssr111592 11 110095974 to 110096043 69 - TSS region transcription start site region 111592
Tssr111593 11 110097544 to 110097586 42 - TSS region transcription start site region 111593
Abca9 11 110100749 to 110168196 67447 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 9
Tssr105707 11 110145593 to 110145604 11 + TSS region transcription start site region 105707
Tssr105708 11 110145614 to 110145625 11 + TSS region transcription start site region 105708
Tssr111594 11 110154745 to 110154750 5 - TSS region transcription start site region 111594
Tssr111595 11 110168073 to 110168182 109 - TSS region transcription start site region 111595
Abca6 11 110176820 to 110251776 74956 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 6
Tssr105709 11 110180161 to 110180173 12 + TSS region transcription start site region 105709
Tssr105710 11 110180183 to 110180211 28 + TSS region transcription start site region 105710
Tssr105711 11 110180216 to 110180229 13 + TSS region transcription start site region 105711
Gm46299 11 110180251 to 110180827 576 + lncRNA gene predicted gene, 46299
Tssr111596 11 110190776 to 110190777 1 - TSS region transcription start site region 111596
Tssr111597 11 110241658 to 110241665 7 - TSS region transcription start site region 111597
Tssr111598 11 110251632 to 110251641 9 - TSS region transcription start site region 111598
Tssr111599 11 110251693 to 110251704 11 - TSS region transcription start site region 111599
Tssr111600 11 110251711 to 110251734 23 - TSS region transcription start site region 111600
Tssr111601 11 110251736 to 110251754 18 - TSS region transcription start site region 111601
Tssr111602 11 110252410 to 110252423 13 - TSS region transcription start site region 111602
Abca5 11 110269369 to 110337716 68347 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 5
Cpgi4063 11 110337013 to 110338132 1119 CpG island CpG island 4063
Tssr111603 11 110337612 to 110337704 92 - TSS region transcription start site region 111603
Gm39445 11 110337838 to 110340005 2167 + lncRNA gene predicted gene, 39445
D11Dcr22 11 110338357 to 110338464 107 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 22
D11Mit100 11 110338357 to 110338465 108 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 100
El6 11 110338357 to 110338465 108 QTL epilepsy 6
D11Mit182 11 110375973 to 110376152 179 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 182
Cpgi4064 11 110379918 to 110380249 331 CpG island CpG island 4064