Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:109667805-110190588

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prkar1a 11 109649405 to 109669656 20251 + protein coding gene protein kinase, cAMP dependent regulatory, type I, alpha
Tssr105698 11 109668580 to 109668668 88 + TSS region transcription start site region 105698
Fam20a 11 109672926 to 109722512 49586 - protein coding gene family with sequence similarity 20, member A
Tssr3715 11 109674865 to 109674870 5 + TSS region transcription start site region 3715
Tssr111563 11 109676094 to 109676099 5 - TSS region transcription start site region 111563
Tssr111564 11 109676130 to 109676147 17 - TSS region transcription start site region 111564
Tssr111565 11 109676156 to 109676168 12 - TSS region transcription start site region 111565
4930507L24Rik 11 109691580 to 109707091 15511 + lncRNA gene RIKEN cDNA 4930507L24 gene
Tssr111566 11 109716740 to 109716743 3 - TSS region transcription start site region 111566
Tssr105699 11 109717272 to 109717277 5 + TSS region transcription start site region 105699
Cpgi4062 11 109721156 to 109722438 1282 CpG island CpG island 4062
Tssr111567 11 109721639 to 109721655 16 - TSS region transcription start site region 111567
Tssr111568 11 109721704 to 109721716 12 - TSS region transcription start site region 111568
Tssr111569 11 109721723 to 109721798 75 - TSS region transcription start site region 111569
Tssr111570 11 109722018 to 109722057 39 - TSS region transcription start site region 111570
Tssr111571 11 109722081 to 109722095 14 - TSS region transcription start site region 111571
Tssr111572 11 109722174 to 109722186 12 - TSS region transcription start site region 111572
Tssr111573 11 109722214 to 109722289 75 - TSS region transcription start site region 111573
Tssr111574 11 109722348 to 109722360 12 - TSS region transcription start site region 111574
Gm42093 11 109734827 to 109748521 13694 + lncRNA gene predicted gene, 42093
Tssr105700 11 109736643 to 109736645 2 + TSS region transcription start site region 105700
Tssr105701 11 109755029 to 109755050 21 + TSS region transcription start site region 105701
Tssr105702 11 109764266 to 109764267 1 + TSS region transcription start site region 105702
9130022K11Rik 11 109765416 to 109766247 831 unclassified gene RIKEN cDNA 9130022K11 gene
Gm11684 11 109768486 to 109770599 2113 + antisense lncRNA gene predicted gene 11684
Tssr111575 11 109771493 to 109771532 39 - TSS region transcription start site region 111575
1700012B07Rik 11 109788266 to 109828079 39813 - protein coding gene RIKEN cDNA 1700012B07 gene
Gm11683 11 109797183 to 109802796 5613 + antisense lncRNA gene predicted gene 11683
Tssr111576 11 109797311 to 109797333 22 - TSS region transcription start site region 111576
Tssr111577 11 109797353 to 109797361 8 - TSS region transcription start site region 111577
Tssr111578 11 109797376 to 109797380 4 - TSS region transcription start site region 111578
Tssr111579 11 109797398 to 109797401 3 - TSS region transcription start site region 111579
Tssr111580 11 109801777 to 109801780 3 - TSS region transcription start site region 111580
Tssr105703 11 109803513 to 109803517 4 + TSS region transcription start site region 105703
Tssr111581 11 109828021 to 109828028 7 - TSS region transcription start site region 111581
Tssr111582 11 109828036 to 109828065 29 - TSS region transcription start site region 111582
Tssr111583 11 109828066 to 109828070 4 - TSS region transcription start site region 111583
Tssr105704 11 109845828 to 109845838 10 + TSS region transcription start site region 105704
Tssr105705 11 109845864 to 109845870 6 + TSS region transcription start site region 105705
1700023C21Rik 11 109845878 to 109848476 2598 + lincRNA gene RIKEN cDNA 1700023C21 gene
Gm39444 11 109927805 to 109930588 2783 - lncRNA gene predicted gene, 39444
Abca8b 11 109932568 to 109995840 63272 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 8b
Tssr105706 11 109936307 to 109936318 11 + TSS region transcription start site region 105706
Gm11697 11 109936316 to 109938135 1819 + antisense lncRNA gene predicted gene 11697
Tssr111584 11 109986894 to 109986906 12 - TSS region transcription start site region 111584
Tssr111585 11 109987016 to 109987027 11 - TSS region transcription start site region 111585
Tssr111586 11 109995641 to 109995653 12 - TSS region transcription start site region 111586
Tssr111587 11 109995658 to 109995681 23 - TSS region transcription start site region 111587
Tssr111588 11 109995747 to 109995762 15 - TSS region transcription start site region 111588
Tssr111589 11 109995775 to 109995800 25 - TSS region transcription start site region 111589
Abca8a 11 110025634 to 110095978 70344 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 8a
Tssr111590 11 110079120 to 110079137 17 - TSS region transcription start site region 111590
Tssr111591 11 110095955 to 110095969 14 - TSS region transcription start site region 111591
Tssr111592 11 110095974 to 110096043 69 - TSS region transcription start site region 111592
Tssr111593 11 110097544 to 110097586 42 - TSS region transcription start site region 111593
Abca9 11 110100749 to 110168196 67447 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 9
Tssr105707 11 110145593 to 110145604 11 + TSS region transcription start site region 105707
Tssr105708 11 110145614 to 110145625 11 + TSS region transcription start site region 105708
Tssr111594 11 110154745 to 110154750 5 - TSS region transcription start site region 111594
Tssr111595 11 110168073 to 110168182 109 - TSS region transcription start site region 111595
Abca6 11 110176820 to 110251776 74956 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 6
Tssr105709 11 110180161 to 110180173 12 + TSS region transcription start site region 105709
Tssr105710 11 110180183 to 110180211 28 + TSS region transcription start site region 105710
Tssr105711 11 110180216 to 110180229 13 + TSS region transcription start site region 105711
Gm46299 11 110180251 to 110180827 576 + lncRNA gene predicted gene, 46299