Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:109467311-110127333

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107 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc16a6 11 109450855 to 109473596 22741 - protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 6
Cpgi4057 11 109472100 to 109472772 672 CpG island CpG island 4057
Tssr105681 11 109472236 to 109472247 11 + TSS region transcription start site region 105681
Tssr111543 11 109472580 to 109472591 11 - TSS region transcription start site region 111543
Tssr111544 11 109472611 to 109472639 28 - TSS region transcription start site region 111544
Tssr111545 11 109472972 to 109472991 19 - TSS region transcription start site region 111545
Cpgi4058 11 109472981 to 109474312 1331 CpG island CpG island 4058
Tssr111546 11 109473036 to 109473050 14 - TSS region transcription start site region 111546
Tssr111547 11 109473065 to 109473079 14 - TSS region transcription start site region 111547
Tssr111548 11 109473093 to 109473112 19 - TSS region transcription start site region 111548
Tssr111549 11 109473133 to 109473153 20 - TSS region transcription start site region 111549
Tssr111550 11 109473220 to 109473278 58 - TSS region transcription start site region 111550
Arsg 11 109473374 to 109573330 99956 + protein coding gene arylsulfatase G
Tssr111551 11 109473656 to 109473666 10 - TSS region transcription start site region 111551
Tssr111552 11 109473735 to 109473746 11 - TSS region transcription start site region 111552
Tssr111553 11 109473761 to 109473785 24 - TSS region transcription start site region 111553
Tssr105682 11 109485631 to 109485713 82 + TSS region transcription start site region 105682
Tssr105683 11 109488574 to 109488588 14 + TSS region transcription start site region 105683
Gm22378 11 109499714 to 109499824 110 - snRNA gene predicted gene, 22378
Tssr105684 11 109525313 to 109525343 30 + TSS region transcription start site region 105684
Tssr105685 11 109543694 to 109543736 42 + TSS region transcription start site region 105685
Tssr111554 11 109549828 to 109549835 7 - TSS region transcription start site region 111554
Wipi1 11 109573521 to 109611389 37868 - protein coding gene WD repeat domain, phosphoinositide interacting 1
Tssr111555 11 109573646 to 109573660 14 - TSS region transcription start site region 111555
Gm39442 11 109580350 to 109597095 16745 + lncRNA gene predicted gene, 39442
Tssr111556 11 109580868 to 109580881 13 - TSS region transcription start site region 111556
Tssr111557 11 109603804 to 109603844 40 - TSS region transcription start site region 111557
Tssr111558 11 109607720 to 109607724 4 - TSS region transcription start site region 111558
Cpgi4059 11 109610862 to 109612229 1367 CpG island CpG island 4059
Tssr111559 11 109611324 to 109611330 6 - TSS region transcription start site region 111559
Tssr111560 11 109611337 to 109611349 12 - TSS region transcription start site region 111560
Tssr111561 11 109611353 to 109611414 61 - TSS region transcription start site region 111561
Tssr111562 11 109611417 to 109611426 9 - TSS region transcription start site region 111562
Tssr105686 11 109613414 to 109613425 11 + TSS region transcription start site region 105686
Tssr105687 11 109613442 to 109613460 18 + TSS region transcription start site region 105687
Tssr105688 11 109616124 to 109616151 27 + TSS region transcription start site region 105688
Gm11685 11 109616320 to 109641789 25469 + lincRNA gene predicted gene 11685
Cpgi4060 11 109635306 to 109635637 331 CpG island CpG island 4060
Tssr105689 11 109649376 to 109649437 61 + TSS region transcription start site region 105689
Prkar1a 11 109649405 to 109669656 20251 + protein coding gene protein kinase, cAMP dependent regulatory, type I, alpha
Cpgi4061 11 109650223 to 109651901 1678 CpG island CpG island 4061
Tssr3713 11 109650346 to 109650349 3 + TSS region transcription start site region 3713
Tssr105690 11 109650508 to 109650529 21 + TSS region transcription start site region 105690
Tssr105691 11 109650534 to 109650554 20 + TSS region transcription start site region 105691
Tssr105692 11 109650574 to 109650579 5 + TSS region transcription start site region 105692
Tssr105693 11 109650925 to 109651003 78 + TSS region transcription start site region 105693
Tssr3714 11 109651004 to 109651009 5 + TSS region transcription start site region 3714
Tssr105694 11 109651129 to 109651160 31 + TSS region transcription start site region 105694
Tssr105695 11 109651459 to 109651470 11 + TSS region transcription start site region 105695
Gm39443 11 109653968 to 109656793 2825 + lncRNA gene predicted gene, 39443
Tssr105696 11 109662621 to 109662628 7 + TSS region transcription start site region 105696
Tssr105697 11 109667603 to 109667627 24 + TSS region transcription start site region 105697
Tssr105698 11 109668580 to 109668668 88 + TSS region transcription start site region 105698
Fam20a 11 109672926 to 109722512 49586 - protein coding gene family with sequence similarity 20, member A
Tssr3715 11 109674865 to 109674870 5 + TSS region transcription start site region 3715
Tssr111563 11 109676094 to 109676099 5 - TSS region transcription start site region 111563
Tssr111564 11 109676130 to 109676147 17 - TSS region transcription start site region 111564
Tssr111565 11 109676156 to 109676168 12 - TSS region transcription start site region 111565
4930507L24Rik 11 109691580 to 109707091 15511 + lncRNA gene RIKEN cDNA 4930507L24 gene
Tssr111566 11 109716740 to 109716743 3 - TSS region transcription start site region 111566
Tssr105699 11 109717272 to 109717277 5 + TSS region transcription start site region 105699
Cpgi4062 11 109721156 to 109722438 1282 CpG island CpG island 4062
Tssr111567 11 109721639 to 109721655 16 - TSS region transcription start site region 111567
Tssr111568 11 109721704 to 109721716 12 - TSS region transcription start site region 111568
Tssr111569 11 109721723 to 109721798 75 - TSS region transcription start site region 111569
Tssr111570 11 109722018 to 109722057 39 - TSS region transcription start site region 111570
Tssr111571 11 109722081 to 109722095 14 - TSS region transcription start site region 111571
Tssr111572 11 109722174 to 109722186 12 - TSS region transcription start site region 111572
Tssr111573 11 109722214 to 109722289 75 - TSS region transcription start site region 111573
Tssr111574 11 109722348 to 109722360 12 - TSS region transcription start site region 111574
Gm42093 11 109734827 to 109748521 13694 + lncRNA gene predicted gene, 42093
Tssr105700 11 109736643 to 109736645 2 + TSS region transcription start site region 105700
Tssr105701 11 109755029 to 109755050 21 + TSS region transcription start site region 105701
Tssr105702 11 109764266 to 109764267 1 + TSS region transcription start site region 105702
9130022K11Rik 11 109765416 to 109766247 831 unclassified gene RIKEN cDNA 9130022K11 gene
Gm11684 11 109768486 to 109770599 2113 + antisense lncRNA gene predicted gene 11684
Tssr111575 11 109771493 to 109771532 39 - TSS region transcription start site region 111575
1700012B07Rik 11 109788266 to 109828079 39813 - protein coding gene RIKEN cDNA 1700012B07 gene
Gm11683 11 109797183 to 109802796 5613 + antisense lncRNA gene predicted gene 11683
Tssr111576 11 109797311 to 109797333 22 - TSS region transcription start site region 111576
Tssr111577 11 109797353 to 109797361 8 - TSS region transcription start site region 111577
Tssr111578 11 109797376 to 109797380 4 - TSS region transcription start site region 111578
Tssr111579 11 109797398 to 109797401 3 - TSS region transcription start site region 111579
Tssr111580 11 109801777 to 109801780 3 - TSS region transcription start site region 111580
Tssr105703 11 109803513 to 109803517 4 + TSS region transcription start site region 105703
Tssr111581 11 109828021 to 109828028 7 - TSS region transcription start site region 111581
Tssr111582 11 109828036 to 109828065 29 - TSS region transcription start site region 111582
Tssr111583 11 109828066 to 109828070 4 - TSS region transcription start site region 111583
Tssr105704 11 109845828 to 109845838 10 + TSS region transcription start site region 105704
Tssr105705 11 109845864 to 109845870 6 + TSS region transcription start site region 105705
1700023C21Rik 11 109845878 to 109848476 2598 + lincRNA gene RIKEN cDNA 1700023C21 gene
Gm39444 11 109927805 to 109930588 2783 - lncRNA gene predicted gene, 39444
Abca8b 11 109932568 to 109995840 63272 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 8b
Tssr105706 11 109936307 to 109936318 11 + TSS region transcription start site region 105706
Gm11697 11 109936316 to 109938135 1819 + antisense lncRNA gene predicted gene 11697
Tssr111584 11 109986894 to 109986906 12 - TSS region transcription start site region 111584
Tssr111585 11 109987016 to 109987027 11 - TSS region transcription start site region 111585
Tssr111586 11 109995641 to 109995653 12 - TSS region transcription start site region 111586
Tssr111587 11 109995658 to 109995681 23 - TSS region transcription start site region 111587
Tssr111588 11 109995747 to 109995762 15 - TSS region transcription start site region 111588
Tssr111589 11 109995775 to 109995800 25 - TSS region transcription start site region 111589
Abca8a 11 110025634 to 110095978 70344 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 8a
Tssr111590 11 110079120 to 110079137 17 - TSS region transcription start site region 111590
Tssr111591 11 110095955 to 110095969 14 - TSS region transcription start site region 111591
Tssr111592 11 110095974 to 110096043 69 - TSS region transcription start site region 111592
Tssr111593 11 110097544 to 110097586 42 - TSS region transcription start site region 111593
Abca9 11 110100749 to 110168196 67447 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 9