Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:103349917-103659928

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arhgap27 11 103331497 to 103363692 32195 - protein coding gene Rho GTPase activating protein 27
Arhgap27os3 11 103344753 to 103350124 5371 + antisense lncRNA gene Rho GTPase activating protein 27, opposite strand 3
Tssr105341 11 103355694 to 103355707 13 + TSS region transcription start site region 105341
Arhgap27os2 11 103355701 to 103361092 5391 + antisense lncRNA gene Rho GTPase activating protein 27, opposite strand 2
Tssr111178 11 103356324 to 103356385 61 - TSS region transcription start site region 111178
Cpgi3966 11 103359077 to 103359538 461 CpG island CpG island 3966
Cpgi3967 11 103360018 to 103361445 1427 CpG island CpG island 3967
Tssr111179 11 103360364 to 103360402 38 - TSS region transcription start site region 111179
Tssr105342 11 103360467 to 103360512 45 + TSS region transcription start site region 105342
Cpgi3968 11 103362353 to 103363680 1327 CpG island CpG island 3968
Arhgap27os1 11 103363213 to 103364651 1438 + antisense lncRNA gene Rho GTPase activating protein 27, opposite strand 1
Tssr111180 11 103363341 to 103363406 65 - TSS region transcription start site region 111180
Tssr111181 11 103363431 to 103363458 27 - TSS region transcription start site region 111181
Tssr111182 11 103363628 to 103363639 11 - TSS region transcription start site region 111182
Tssr3690 11 103363644 to 103363659 15 - TSS region transcription start site region 3690
Tssr111183 11 103363671 to 103363685 14 - TSS region transcription start site region 111183
Plekhm1 11 103365092 to 103412664 47572 - protein coding gene pleckstrin homology domain containing, family M (with RUN domain) member 1
Tssr111184 11 103374051 to 103374063 12 - TSS region transcription start site region 111184
Tssr111185 11 103374084 to 103374100 16 - TSS region transcription start site region 111185
Tssr111186 11 103374104 to 103374120 16 - TSS region transcription start site region 111186
Tssr111187 11 103375962 to 103375969 7 - TSS region transcription start site region 111187
Cia40 11 103383166 to 115130618 11747452 QTL collagen induced arthritis QTL 40
D11Mit360 11 103383166 to 103383289 123 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 360
Motr1 11 103383289 to 87800372 -15582917 QTL modifier of tubby retinal degeneration 1
Tssr111188 11 103395122 to 103395135 13 - TSS region transcription start site region 111188
Tssr111189 11 103395256 to 103395268 12 - TSS region transcription start site region 111189
Tssr111190 11 103403855 to 103403866 11 - TSS region transcription start site region 111190
Tssr111191 11 103403884 to 103403918 34 - TSS region transcription start site region 111191
Tssr111192 11 103403951 to 103403958 7 - TSS region transcription start site region 111192
Tssr111193 11 103404020 to 103404029 9 - TSS region transcription start site region 111193
Cpgi3969 11 103412054 to 103413088 1034 CpG island CpG island 3969
Tssr111194 11 103412654 to 103412666 12 - TSS region transcription start site region 111194
Tssr111195 11 103412668 to 103412711 43 - TSS region transcription start site region 111195
Tssr105343 11 103412828 to 103412840 12 + TSS region transcription start site region 105343
Tssr111196 11 103413070 to 103413093 23 - TSS region transcription start site region 111196
Gm39397 11 103421732 to 103422042 310 + lincRNA gene predicted gene, 39397
Tssr105344 11 103425240 to 103425270 30 + TSS region transcription start site region 105344
4930445B03Rik 11 103428279 to 103429493 1214 unclassified gene RIKEN cDNA 4930445B03 gene
Tssr111197 11 103443841 to 103443853 12 - TSS region transcription start site region 111197
Tssr105345 11 103445546 to 103445550 4 + TSS region transcription start site region 105345
Lrrc37a 11 103451955 to 103504597 52642 - protein coding gene leucine rich repeat containing 37A
Tssr111198 11 103504893 to 103504903 10 - TSS region transcription start site region 111198
Tssr111199 11 103504917 to 103504928 11 - TSS region transcription start site region 111199
Tssr111200 11 103504929 to 103504937 8 - TSS region transcription start site region 111200
Tssr111201 11 103504955 to 103504966 11 - TSS region transcription start site region 111201
4930467D19Rik 11 103505281 to 103506958 1677 unclassified gene RIKEN cDNA 4930467D19 gene
Gm884 11 103534577 to 103621140 86563 - protein coding gene predicted gene 884
Tssr111202 11 103567880 to 103567881 1 - TSS region transcription start site region 111202
Gm11643 11 103600242 to 103601105 863 - pseudogene predicted gene 11643
Tssr3691 11 103621413 to 103621416 3 - TSS region transcription start site region 3691
Tssr111203 11 103621422 to 103621442 20 - TSS region transcription start site region 111203
Cpgi3970 11 103627454 to 103627804 350 CpG island CpG island 3970
Tssr111204 11 103627642 to 103627656 14 - TSS region transcription start site region 111204
Tssr111205 11 103627657 to 103627669 12 - TSS region transcription start site region 111205
Gm39504 11 103629191 to 103629707 516 - protein coding gene predicted gene, 39504
Lyzl6 11 103631070 to 103638890 7820 - protein coding gene lysozyme-like 6
Tssr111206 11 103638839 to 103638850 11 - TSS region transcription start site region 111206
Tssr111207 11 103638852 to 103638861 9 - TSS region transcription start site region 111207
Tssr111208 11 103638862 to 103638893 31 - TSS region transcription start site region 111208
Tssr111209 11 103638899 to 103638906 7 - TSS region transcription start site region 111209
Tssr105346 11 103638919 to 103638931 12 + TSS region transcription start site region 105346
1700072I22Rik 11 103638936 to 103649013 10077 + lncRNA gene RIKEN cDNA 1700072I22 gene
Tssr105347 11 103638950 to 103638955 5 + TSS region transcription start site region 105347
Tssr105348 11 103638978 to 103638985 7 + TSS region transcription start site region 105348
Cpgi3971 11 103649117 to 103650678 1561 CpG island CpG island 3971
Tssr105349 11 103649498 to 103649521 23 + TSS region transcription start site region 105349
Tssr105350 11 103649530 to 103649557 27 + TSS region transcription start site region 105350
Tssr105351 11 103649569 to 103649574 5 + TSS region transcription start site region 105351
Rprml 11 103649570 to 103650579 1009 + protein coding gene reprimo-like
Tssr105352 11 103649578 to 103649585 7 + TSS region transcription start site region 105352
Tssr105353 11 103649640 to 103649649 9 + TSS region transcription start site region 105353
Tssr105354 11 103649700 to 103649714 14 + TSS region transcription start site region 105354
Tssr111210 11 103652662 to 103652666 4 - TSS region transcription start site region 111210