Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:102396580-102556587

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104 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rundc3a 11 102393403 to 102402555 9152 + protein coding gene RUN domain containing 3A
Cpgi3920 11 102399249 to 102400233 984 CpG island CpG island 3920
Tssr105221 11 102399815 to 102399826 11 + TSS region transcription start site region 105221
Tssr105222 11 102399829 to 102399842 13 + TSS region transcription start site region 105222
Slc25a39 11 102402985 to 102407946 4961 - protein coding gene solute carrier family 25, member 39
Tssr111063 11 102403282 to 102403296 14 - TSS region transcription start site region 111063
Mir6930 11 102404920 to 102404987 67 - miRNA gene microRNA 6930
Tssr111064 11 102406609 to 102406622 13 - TSS region transcription start site region 111064
Tssr111065 11 102406742 to 102406752 10 - TSS region transcription start site region 111065
Tssr111066 11 102406766 to 102406782 16 - TSS region transcription start site region 111066
Tssr111067 11 102406783 to 102406828 45 - TSS region transcription start site region 111067
Cpgi3921 11 102406972 to 102408114 1142 CpG island CpG island 3921
Tssr111068 11 102407437 to 102407448 11 - TSS region transcription start site region 111068
Tssr111069 11 102407455 to 102407528 73 - TSS region transcription start site region 111069
Tssr105223 11 102407613 to 102407632 19 + TSS region transcription start site region 105223
Tssr105224 11 102407719 to 102407733 14 + TSS region transcription start site region 105224
Tssr111070 11 102407857 to 102407895 38 - TSS region transcription start site region 111070
Tssr111071 11 102407899 to 102407913 14 - TSS region transcription start site region 111071
Tssr111072 11 102407922 to 102407951 29 - TSS region transcription start site region 111072
Cpgi3922 11 102408292 to 102408811 519 CpG island CpG island 3922
Tssr111073 11 102408457 to 102408473 16 - TSS region transcription start site region 111073
Tssr105225 11 102429353 to 102429373 20 + TSS region transcription start site region 105225
Tssr111074 11 102430195 to 102430264 69 - TSS region transcription start site region 111074
Grn 11 102430322 to 102436809 6487 + protein coding gene granulin
Tssr105226 11 102430368 to 102430399 31 + TSS region transcription start site region 105226
Tssr105227 11 102430463 to 102430523 60 + TSS region transcription start site region 105227
Tssr105228 11 102432555 to 102432581 26 + TSS region transcription start site region 105228
Tssr105229 11 102432786 to 102432802 16 + TSS region transcription start site region 105229
Tssr105230 11 102432822 to 102432845 23 + TSS region transcription start site region 105230
Tssr105231 11 102432850 to 102432864 14 + TSS region transcription start site region 105231
Tssr105232 11 102432886 to 102432910 24 + TSS region transcription start site region 105232
Tssr105233 11 102433000 to 102433027 27 + TSS region transcription start site region 105233
Tssr105234 11 102433030 to 102433051 21 + TSS region transcription start site region 105234
Tssr105235 11 102433069 to 102433082 13 + TSS region transcription start site region 105235
Tssr105236 11 102433216 to 102433237 21 + TSS region transcription start site region 105236
Tssr105237 11 102433239 to 102433315 76 + TSS region transcription start site region 105237
Tssr105238 11 102433318 to 102433329 11 + TSS region transcription start site region 105238
Tssr105239 11 102433473 to 102433514 41 + TSS region transcription start site region 105239
Tssr105240 11 102433518 to 102433534 16 + TSS region transcription start site region 105240
Tssr105241 11 102433924 to 102433957 33 + TSS region transcription start site region 105241
Tssr105242 11 102433960 to 102433991 31 + TSS region transcription start site region 105242
Tssr111075 11 102433970 to 102433981 11 - TSS region transcription start site region 111075
Tssr105243 11 102434126 to 102434134 8 + TSS region transcription start site region 105243
Tssr105244 11 102434141 to 102434154 13 + TSS region transcription start site region 105244
Tssr105245 11 102434160 to 102434171 11 + TSS region transcription start site region 105245
Tssr105246 11 102434179 to 102434190 11 + TSS region transcription start site region 105246
Tssr105247 11 102434207 to 102434238 31 + TSS region transcription start site region 105247
Tssr105248 11 102434391 to 102434438 47 + TSS region transcription start site region 105248
Tssr105249 11 102434444 to 102434471 27 + TSS region transcription start site region 105249
Tssr105250 11 102434478 to 102434489 11 + TSS region transcription start site region 105250
Tssr105251 11 102434700 to 102434802 102 + TSS region transcription start site region 105251
Tssr105252 11 102435061 to 102435075 14 + TSS region transcription start site region 105252
Tssr105253 11 102435078 to 102435113 35 + TSS region transcription start site region 105253
Tssr105254 11 102435238 to 102435257 19 + TSS region transcription start site region 105254
Tssr105255 11 102435258 to 102435267 9 + TSS region transcription start site region 105255
Tssr111076 11 102435265 to 102435280 15 - TSS region transcription start site region 111076
Tssr105256 11 102435278 to 102435297 19 + TSS region transcription start site region 105256
Tssr105257 11 102435315 to 102435329 14 + TSS region transcription start site region 105257
Tssr105258 11 102435345 to 102435370 25 + TSS region transcription start site region 105258
Tssr111077 11 102435387 to 102435435 48 - TSS region transcription start site region 111077
Tssr105259 11 102435704 to 102435727 23 + TSS region transcription start site region 105259
Tssr105260 11 102435741 to 102435756 15 + TSS region transcription start site region 105260
Tssr105261 11 102435795 to 102435864 69 + TSS region transcription start site region 105261
Tssr105262 11 102435880 to 102435895 15 + TSS region transcription start site region 105262
Tssr105263 11 102436040 to 102436052 12 + TSS region transcription start site region 105263
Tssr105264 11 102436099 to 102436150 51 + TSS region transcription start site region 105264
Tssr111078 11 102436162 to 102436197 35 - TSS region transcription start site region 111078
Tssr105265 11 102436164 to 102436189 25 + TSS region transcription start site region 105265
Tssr105266 11 102436369 to 102436380 11 + TSS region transcription start site region 105266
Tssr105267 11 102436475 to 102436484 9 + TSS region transcription start site region 105267
Tssr105268 11 102436520 to 102436534 14 + TSS region transcription start site region 105268
Tssr111079 11 102436803 to 102436807 4 - TSS region transcription start site region 111079
Fam171a2 11 102436981 to 102447674 10693 - protein coding gene family with sequence similarity 171, member A2
Cpgi3923 11 102437047 to 102438945 1898 CpG island CpG island 3923
Tssr3685 11 102440615 to 102440618 3 + TSS region transcription start site region 3685
Tssr111080 11 102444796 to 102444803 7 - TSS region transcription start site region 111080
Cpgi3924 11 102446695 to 102448156 1461 CpG island CpG island 3924
Tssr111081 11 102447597 to 102447610 13 - TSS region transcription start site region 111081
Tssr111082 11 102447612 to 102447642 30 - TSS region transcription start site region 111082
Tssr111083 11 102447647 to 102447677 30 - TSS region transcription start site region 111083
Itga2b 11 102453297 to 102469883 16586 - protein coding gene integrin alpha 2b
Pbd1 11 102453297 to 112493297 10040000 QTL peak bone density 1
Cpgi3925 11 102455729 to 102456460 731 CpG island CpG island 3925
Gm23563 11 102458724 to 102458974 250 - unclassified non-coding RNA gene predicted gene, 23563
Cpgi3926 11 102465677 to 102465923 246 CpG island CpG island 3926
Cpgi3927 11 102467068 to 102467634 566 CpG island CpG island 3927
Tssr111084 11 102469734 to 102469752 18 - TSS region transcription start site region 111084
Tssr111085 11 102469839 to 102469866 27 - TSS region transcription start site region 111085
Tssr111086 11 102470101 to 102470110 9 - TSS region transcription start site region 111086
Tssr111087 11 102470144 to 102470165 21 - TSS region transcription start site region 111087
Gpatch8 11 102475911 to 102556192 80281 - protein coding gene G patch domain containing 8
Tssr111088 11 102476580 to 102476587 7 - TSS region transcription start site region 111088
Tssr111089 11 102478505 to 102478546 41 - TSS region transcription start site region 111089
Tssr111090 11 102480774 to 102480788 14 - TSS region transcription start site region 111090
Tssr111091 11 102481062 to 102481073 11 - TSS region transcription start site region 111091
Tssr111092 11 102481082 to 102481097 15 - TSS region transcription start site region 111092
Gm11628 11 102492439 to 102492609 170 - pseudogene predicted gene 11628
Mdk-ps1 11 102545702 to 102546022 320 + pseudogene midkine pseudogene 1
Gm25337 11 102549196 to 102549299 103 - snRNA gene predicted gene, 25337
Tssr111093 11 102553029 to 102553033 4 - TSS region transcription start site region 111093
Tssr111094 11 102553222 to 102553226 4 - TSS region transcription start site region 111094
Cpgi3928 11 102555633 to 102556569 936 CpG island CpG island 3928
Tssr111095 11 102556122 to 102556171 49 - TSS region transcription start site region 111095
Tssr105269 11 102556495 to 102556513 18 + TSS region transcription start site region 105269