Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:102310565-102410570

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ubtf 11 102304560 to 102319742 15182 - protein coding gene upstream binding transcription factor, RNA polymerase I
Cpgi3917 11 102316349 to 102320727 4378 CpG island CpG island 3917
Tssr111024 11 102316607 to 102316646 39 - TSS region transcription start site region 111024
Tssr111025 11 102316660 to 102316678 18 - TSS region transcription start site region 111025
Tssr111026 11 102316691 to 102316708 17 - TSS region transcription start site region 111026
Tssr105213 11 102316848 to 102316859 11 + TSS region transcription start site region 105213
Tssr105214 11 102316874 to 102316969 95 + TSS region transcription start site region 105214
Tssr105215 11 102317004 to 102317015 11 + TSS region transcription start site region 105215
Tssr111027 11 102317623 to 102317642 19 - TSS region transcription start site region 111027
Tssr111028 11 102317760 to 102317785 25 - TSS region transcription start site region 111028
Tssr111029 11 102317787 to 102317816 29 - TSS region transcription start site region 111029
Tssr111030 11 102317860 to 102317877 17 - TSS region transcription start site region 111030
Tssr111031 11 102318036 to 102318061 25 - TSS region transcription start site region 111031
Tssr111032 11 102318941 to 102319004 63 - TSS region transcription start site region 111032
Tssr111033 11 102319093 to 102319105 12 - TSS region transcription start site region 111033
Tssr111034 11 102319342 to 102319349 7 - TSS region transcription start site region 111034
Tssr111035 11 102319382 to 102319446 64 - TSS region transcription start site region 111035
C030013E06Rik 11 102319788 to 102320242 454 unclassified gene RIKEN cDNA C030013E06 gene
Tssr111036 11 102319825 to 102319859 34 - TSS region transcription start site region 111036
Tssr111037 11 102320265 to 102320278 13 - TSS region transcription start site region 111037
Slc4a1 11 102348820 to 102365281 16461 - protein coding gene solute carrier family 4 (anion exchanger), member 1
Tssr111038 11 102349295 to 102349299 4 - TSS region transcription start site region 111038
Tssr111039 11 102349404 to 102349414 10 - TSS region transcription start site region 111039
Tssr111040 11 102349748 to 102349779 31 - TSS region transcription start site region 111040
Tssr111041 11 102349969 to 102349986 17 - TSS region transcription start site region 111041
Tssr111042 11 102350108 to 102350128 20 - TSS region transcription start site region 111042
Tssr111043 11 102350181 to 102350199 18 - TSS region transcription start site region 111043
Tssr111044 11 102353232 to 102353255 23 - TSS region transcription start site region 111044
Tssr111045 11 102353277 to 102353289 12 - TSS region transcription start site region 111045
Tssr111046 11 102353298 to 102353313 15 - TSS region transcription start site region 111046
Tssr111047 11 102353316 to 102353344 28 - TSS region transcription start site region 111047
Tssr111048 11 102354358 to 102354375 17 - TSS region transcription start site region 111048
Tssr111049 11 102356114 to 102356142 28 - TSS region transcription start site region 111049
Tssr111050 11 102356166 to 102356192 26 - TSS region transcription start site region 111050
Tssr111051 11 102356210 to 102356240 30 - TSS region transcription start site region 111051
Tssr111052 11 102356437 to 102356450 13 - TSS region transcription start site region 111052
Tssr111053 11 102356494 to 102356506 12 - TSS region transcription start site region 111053
Tssr111054 11 102356828 to 102356839 11 - TSS region transcription start site region 111054
Tssr111055 11 102356889 to 102356911 22 - TSS region transcription start site region 111055
Tssr111056 11 102357084 to 102357096 12 - TSS region transcription start site region 111056
Tssr111057 11 102357161 to 102357172 11 - TSS region transcription start site region 111057
Tssr111058 11 102358477 to 102358501 24 - TSS region transcription start site region 111058
Tssr111059 11 102360565 to 102360570 5 - TSS region transcription start site region 111059
Tssr105216 11 102361176 to 102361202 26 + TSS region transcription start site region 105216
Tssr111060 11 102361445 to 102361457 12 - TSS region transcription start site region 111060
Tssr111061 11 102363692 to 102363704 12 - TSS region transcription start site region 111061
Tssr111062 11 102365111 to 102365168 57 - TSS region transcription start site region 111062
Tssr3684 11 102365173 to 102365178 5 - TSS region transcription start site region 3684
Bloodlinc 11 102375551 to 102377020 1469 - lincRNA gene Bloodlinc, erythroid developmental long intergenic non-protein coding transcript
Cpgi3918 11 102375679 to 102375960 281 CpG island CpG island 3918
Gm34253 11 102376044 to 102381581 5537 + lncRNA gene predicted gene, 34253
Cpgi3919 11 102393054 to 102393945 891 CpG island CpG island 3919
Rundc3a 11 102393403 to 102402555 9152 + protein coding gene RUN domain containing 3A
Tssr105217 11 102393419 to 102393496 77 + TSS region transcription start site region 105217
Tssr105218 11 102393521 to 102393542 21 + TSS region transcription start site region 105218
Tssr105219 11 102393551 to 102393562 11 + TSS region transcription start site region 105219
Tssr105220 11 102393582 to 102393589 7 + TSS region transcription start site region 105220
Cpgi3920 11 102399249 to 102400233 984 CpG island CpG island 3920
Tssr105221 11 102399815 to 102399826 11 + TSS region transcription start site region 105221
Tssr105222 11 102399829 to 102399842 13 + TSS region transcription start site region 105222
Slc25a39 11 102402985 to 102407946 4961 - protein coding gene solute carrier family 25, member 39
Tssr111063 11 102403282 to 102403296 14 - TSS region transcription start site region 111063
Mir6930 11 102404920 to 102404987 67 - miRNA gene microRNA 6930
Tssr111064 11 102406609 to 102406622 13 - TSS region transcription start site region 111064
Tssr111065 11 102406742 to 102406752 10 - TSS region transcription start site region 111065
Tssr111066 11 102406766 to 102406782 16 - TSS region transcription start site region 111066
Tssr111067 11 102406783 to 102406828 45 - TSS region transcription start site region 111067
Cpgi3921 11 102406972 to 102408114 1142 CpG island CpG island 3921
Tssr111068 11 102407437 to 102407448 11 - TSS region transcription start site region 111068
Tssr111069 11 102407455 to 102407528 73 - TSS region transcription start site region 111069
Tssr105223 11 102407613 to 102407632 19 + TSS region transcription start site region 105223
Tssr105224 11 102407719 to 102407733 14 + TSS region transcription start site region 105224
Tssr111070 11 102407857 to 102407895 38 - TSS region transcription start site region 111070
Tssr111071 11 102407899 to 102407913 14 - TSS region transcription start site region 111071
Tssr111072 11 102407922 to 102407951 29 - TSS region transcription start site region 111072
Cpgi3922 11 102408292 to 102408811 519 CpG island CpG island 3922
Tssr111073 11 102408457 to 102408473 16 - TSS region transcription start site region 111073