Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:101267709-101467724

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124 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Wnk4 11 101260567 to 101277409 16842 + protein coding gene WNK lysine deficient protein kinase 4
Tssr105071 11 101268779 to 101268785 6 + TSS region transcription start site region 105071
Cpgi3865 11 101276520 to 101276722 202 CpG island CpG island 3865
Coa3 11 101277970 to 101278948 978 - protein coding gene cytochrome C oxidase assembly factor 3
Cpgi3866 11 101278590 to 101279510 920 CpG island CpG island 3866
Tssr110921 11 101278927 to 101278969 42 - TSS region transcription start site region 110921
Tssr105072 11 101279092 to 101279111 19 + TSS region transcription start site region 105072
Tssr105073 11 101279112 to 101279147 35 + TSS region transcription start site region 105073
Tssr105074 11 101279157 to 101279188 31 + TSS region transcription start site region 105074
Cntd1 11 101279203 to 101288701 9498 + protein coding gene cyclin N-terminal domain containing 1
Becn1 11 101288262 to 101302290 14028 - protein coding gene beclin 1, autophagy related
Cpgi3867 11 101301743 to 101302482 739 CpG island CpG island 3867
Tssr110922 11 101302229 to 101302291 62 - TSS region transcription start site region 110922
Gm11617 11 101306742 to 101307380 638 + pseudogene predicted gene 11617
Cpgi3868 11 101315714 to 101316895 1181 CpG island CpG island 3868
Tssr105075 11 101316200 to 101316275 75 + TSS region transcription start site region 105075
Psme3 11 101316251 to 101323531 7280 + protein coding gene proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)
Tssr105076 11 101316836 to 101316890 54 + TSS region transcription start site region 105076
Tssr105077 11 101316917 to 101316927 10 + TSS region transcription start site region 105077
Tssr105078 11 101320723 to 101320737 14 + TSS region transcription start site region 105078
Tssr105079 11 101321883 to 101321916 33 + TSS region transcription start site region 105079
Tssr105080 11 101322054 to 101322095 41 + TSS region transcription start site region 105080
Tssr105081 11 101322172 to 101322189 17 + TSS region transcription start site region 105081
Tssr105082 11 101322572 to 101322591 19 + TSS region transcription start site region 105082
Tssr105083 11 101322846 to 101322897 51 + TSS region transcription start site region 105083
Tssr105084 11 101323033 to 101323064 31 + TSS region transcription start site region 105084
Aoc2 11 101325063 to 101329702 4639 + protein coding gene amine oxidase, copper containing 2 (retina-specific)
Aoc3 11 101330606 to 101339430 8824 + protein coding gene amine oxidase, copper containing 3
Tssr105085 11 101330773 to 101330795 22 + TSS region transcription start site region 105085
Tssr105086 11 101330810 to 101330820 10 + TSS region transcription start site region 105086
Tssr105087 11 101330832 to 101330858 26 + TSS region transcription start site region 105087
Tssr105088 11 101330863 to 101330874 11 + TSS region transcription start site region 105088
Tssr105089 11 101330879 to 101330886 7 + TSS region transcription start site region 105089
Tssr105090 11 101337641 to 101337645 4 + TSS region transcription start site region 105090
Tssr105091 11 101337762 to 101337777 15 + TSS region transcription start site region 105091
Tssr110923 11 101338011 to 101338039 28 - TSS region transcription start site region 110923
Tssr105092 11 101338237 to 101338266 29 + TSS region transcription start site region 105092
Gm28156 11 101339660 to 101347939 8279 - antisense lncRNA gene predicted gene 28156
4931418L13Rik 11 101347972 to 101348572 600 unclassified gene RIKEN cDNA 4931418L13 gene
Tssr105093 11 101348012 to 101348019 7 + TSS region transcription start site region 105093
Gm11618 11 101352236 to 101353139 903 + pseudogene predicted gene 11618
Gm11619 11 101353309 to 101353545 236 - pseudogene predicted gene 11619
Gm25593 11 101353342 to 101353437 95 - miRNA gene predicted gene, 25593
Tssr105094 11 101367542 to 101367565 23 + TSS region transcription start site region 105094
Tssr105095 11 101367709 to 101367724 15 + TSS region transcription start site region 105095
G6pc 11 101367716 to 101377903 10187 + protein coding gene glucose-6-phosphatase, catalytic
Tssr105096 11 101370713 to 101370723 10 + TSS region transcription start site region 105096
Tssr105097 11 101373994 to 101374012 18 + TSS region transcription start site region 105097
Tssr105098 11 101374653 to 101374673 20 + TSS region transcription start site region 105098
Tssr3676 11 101376302 to 101376331 29 + TSS region transcription start site region 3676
Tssr105099 11 101376474 to 101376488 14 + TSS region transcription start site region 105099
Tssr105100 11 101376623 to 101376630 7 + TSS region transcription start site region 105100
Tssr105101 11 101376634 to 101376643 9 + TSS region transcription start site region 105101
Tssr105102 11 101376657 to 101376670 13 + TSS region transcription start site region 105102
Tssr105103 11 101377172 to 101377181 9 + TSS region transcription start site region 105103
Tssr105104 11 101377186 to 101377192 6 + TSS region transcription start site region 105104
Tssr105105 11 101377203 to 101377211 8 + TSS region transcription start site region 105105
Tssr105106 11 101377221 to 101377231 10 + TSS region transcription start site region 105106
Tssr105107 11 101377306 to 101377314 8 + TSS region transcription start site region 105107
Tssr3677 11 101396181 to 101396195 14 + TSS region transcription start site region 3677
Gm25475 11 101397589 to 101397768 179 - snRNA gene predicted gene, 25475
Gm27029 11 101406664 to 101424796 18132 - protein coding gene predicted gene, 27029
Aarsd1 11 101406665 to 101417433 10768 - protein coding gene alanyl-tRNA synthetase domain containing 1
Cpgi3869 11 101416989 to 101417641 652 CpG island CpG island 3869
Tssr110924 11 101417392 to 101417407 15 - TSS region transcription start site region 110924
Tssr110925 11 101417415 to 101417427 12 - TSS region transcription start site region 110925
Ptges3l 11 101418812 to 101425333 6521 - protein coding gene prostaglandin E synthase 3 like
Mir6929 11 101419187 to 101419253 66 - miRNA gene microRNA 6929
Tssr110926 11 101424630 to 101424675 45 - TSS region transcription start site region 110926
Cpgi3870 11 101424949 to 101425877 928 CpG island CpG island 3870
Tssr105108 11 101425068 to 101425114 46 + TSS region transcription start site region 105108
Rundc1 11 101425085 to 101435666 10581 + protein coding gene RUN domain containing 1
Tssr110927 11 101425330 to 101425388 58 - TSS region transcription start site region 110927
Tssr110928 11 101425615 to 101425642 27 - TSS region transcription start site region 110928
Cpgi3871 11 101442117 to 101442880 763 CpG island CpG island 3871
Tssr105109 11 101442289 to 101442294 5 + TSS region transcription start site region 105109
Rpl27 11 101442298 to 101445529 3231 + protein coding gene ribosomal protein L27
Tssr105110 11 101442367 to 101442378 11 + TSS region transcription start site region 105110
Tssr105111 11 101442379 to 101442395 16 + TSS region transcription start site region 105111
Tssr105112 11 101442401 to 101442410 9 + TSS region transcription start site region 105112
Tssr105113 11 101442412 to 101442439 27 + TSS region transcription start site region 105113
Tssr105114 11 101442440 to 101442468 28 + TSS region transcription start site region 105114
Tssr105115 11 101442480 to 101442494 14 + TSS region transcription start site region 105115
Tssr105116 11 101442522 to 101442531 9 + TSS region transcription start site region 105116
Tssr105117 11 101442677 to 101442684 7 + TSS region transcription start site region 105117
Tssr105118 11 101442693 to 101442718 25 + TSS region transcription start site region 105118
Tssr105119 11 101448403 to 101448487 84 + TSS region transcription start site region 105119
Ifi35 11 101448412 to 101458701 10289 + protein coding gene interferon-induced protein 35
Gm11626 11 101456576 to 101457390 814 - antisense lncRNA gene predicted gene 11626
Vat1 11 101458748 to 101466199 7451 - protein coding gene vesicle amine transport 1
Tssr110929 11 101459246 to 101459277 31 - TSS region transcription start site region 110929
Tssr110930 11 101459284 to 101459302 18 - TSS region transcription start site region 110930
Tssr110931 11 101459356 to 101459369 13 - TSS region transcription start site region 110931
Tssr110932 11 101459523 to 101459534 11 - TSS region transcription start site region 110932
Tssr110933 11 101459699 to 101459726 27 - TSS region transcription start site region 110933
Tssr105120 11 101459724 to 101459766 42 + TSS region transcription start site region 105120
Tssr110934 11 101459734 to 101459749 15 - TSS region transcription start site region 110934
Tssr110935 11 101459773 to 101459807 34 - TSS region transcription start site region 110935
Tssr110936 11 101459895 to 101459923 28 - TSS region transcription start site region 110936
Tssr110937 11 101459995 to 101460009 14 - TSS region transcription start site region 110937
Tssr105121 11 101460000 to 101460013 13 + TSS region transcription start site region 105121
Tssr105122 11 101460041 to 101460053 12 + TSS region transcription start site region 105122
Tssr105123 11 101460083 to 101460098 15 + TSS region transcription start site region 105123
Tssr110938 11 101460084 to 101460102 18 - TSS region transcription start site region 110938
Tssr105124 11 101460124 to 101460140 16 + TSS region transcription start site region 105124
Tssr105125 11 101460223 to 101460237 14 + TSS region transcription start site region 105125
Tssr110939 11 101460438 to 101460481 43 - TSS region transcription start site region 110939
Tssr110940 11 101460483 to 101460544 61 - TSS region transcription start site region 110940
Tssr110941 11 101462232 to 101462250 18 - TSS region transcription start site region 110941
Tssr110942 11 101462432 to 101462472 40 - TSS region transcription start site region 110942
Tssr110943 11 101462543 to 101462561 18 - TSS region transcription start site region 110943
Tssr110944 11 101462709 to 101462732 23 - TSS region transcription start site region 110944
Tssr110945 11 101462734 to 101462750 16 - TSS region transcription start site region 110945
Cpgi3872 11 101464984 to 101466427 1443 CpG island CpG island 3872
Tssr110946 11 101465190 to 101465222 32 - TSS region transcription start site region 110946
Tssr105126 11 101465302 to 101465317 15 + TSS region transcription start site region 105126
Tssr105127 11 101465478 to 101465499 21 + TSS region transcription start site region 105127
Tssr110947 11 101465927 to 101465959 32 - TSS region transcription start site region 110947
Tssr110948 11 101466136 to 101466150 14 - TSS region transcription start site region 110948
Tssr110949 11 101466158 to 101466216 58 - TSS region transcription start site region 110949
Tssr110950 11 101466222 to 101466237 15 - TSS region transcription start site region 110950
Tssr110951 11 101466248 to 101466257 9 - TSS region transcription start site region 110951
Cpgi3873 11 101467253 to 101467427 174 CpG island CpG island 3873
Cpgi3874 11 101467625 to 101469052 1427 CpG island CpG island 3874