Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:95490334-95970337

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mrpl42 10 95480805 to 95501940 21135 - protein coding gene mitochondrial ribosomal protein L42
Tssr99045 10 95494791 to 95494795 4 - TSS region transcription start site region 99045
Cpgi2141 10 95501612 to 95502136 524 CpG island CpG island 2141
Tssr99046 10 95501921 to 95501953 32 - TSS region transcription start site region 99046
Tssr99047 10 95501957 to 95501966 9 - TSS region transcription start site region 99047
Gm46239 10 95512227 to 95514786 2559 - lncRNA gene predicted gene, 46239
Cpgi2142 10 95514347 to 95516021 1674 CpG island CpG island 2142
Tssr99048 10 95514742 to 95514769 27 - TSS region transcription start site region 99048
Tssr99049 10 95514770 to 95514789 19 - TSS region transcription start site region 99049
Tssr95364 10 95514870 to 95514888 18 + TSS region transcription start site region 95364
Tssr95365 10 95514962 to 95514970 8 + TSS region transcription start site region 95365
Tssr95366 10 95515116 to 95515161 45 + TSS region transcription start site region 95366
Ube2n 10 95515162 to 95545658 30496 + protein coding gene ubiquitin-conjugating enzyme E2N
Tssr95367 10 95515170 to 95515180 10 + TSS region transcription start site region 95367
Tssr95368 10 95523184 to 95523191 7 + TSS region transcription start site region 95368
Tssr95369 10 95527166 to 95527169 3 + TSS region transcription start site region 95369
Siim1 10 95545406 to 95545406 0 QTL stress induced immobility 1
Nudt4 10 95547007 to 95564146 17139 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 4
Tssr99050 10 95548524 to 95548538 14 - TSS region transcription start site region 99050
Tssr99051 10 95548923 to 95548934 11 - TSS region transcription start site region 99051
Mir3058 10 95559231 to 95559321 90 - miRNA gene microRNA 3058
Cpgi2143 10 95563224 to 95564627 1403 CpG island CpG island 2143
Tssr95370 10 95563866 to 95563871 5 + TSS region transcription start site region 95370
Tssr99052 10 95564021 to 95564028 7 - TSS region transcription start site region 99052
Tssr99053 10 95564034 to 95564062 28 - TSS region transcription start site region 99053
Tssr99054 10 95564065 to 95564091 26 - TSS region transcription start site region 99054
Tssr99055 10 95564099 to 95564121 22 - TSS region transcription start site region 99055
Tssr99056 10 95564135 to 95564154 19 - TSS region transcription start site region 99056
Tssr99057 10 95564173 to 95564181 8 - TSS region transcription start site region 99057
Gm23776 10 95603792 to 95604116 324 + unclassified non-coding RNA gene predicted gene, 23776
Tssr99058 10 95630378 to 95630380 2 - TSS region transcription start site region 99058
Gm33336 10 95630503 to 95632244 1741 - lincRNA gene predicted gene, 33336
Gm47667 10 95634483 to 95636425 1942 + lincRNA gene predicted gene, 47667
Tssr95371 10 95634494 to 95634532 38 + TSS region transcription start site region 95371
Anapc15-ps 10 95672991 to 95673451 460 - pseudogene anaphase prompoting complex C subunit 15, pseudogene
Tssr99059 10 95673464 to 95673485 21 - TSS region transcription start site region 99059
Cpgi2144 10 95680804 to 95680993 189 CpG island CpG island 2144
2310011C19Rik 10 95680806 to 95681123 317 unclassified gene RIKEN cDNA 2310011C19 gene
Gm47669 10 95703051 to 95703462 411 - pseudogene predicted gene, 47669
Tssr95372 10 95708144 to 95708150 6 + TSS region transcription start site region 95372
Gm47671 10 95714001 to 95717507 3506 - lincRNA gene predicted gene, 47671
1110019B22Rik 10 95719133 to 95722500 3367 - lincRNA gene RIKEN cDNA 1110019B22 gene
Tssr99060 10 95722346 to 95722353 7 - TSS region transcription start site region 99060
Tssr99061 10 95722430 to 95722478 48 - TSS region transcription start site region 99061
Gm47708 10 95730183 to 95739356 9173 + lincRNA gene predicted gene, 47708
Tssr95373 10 95730283 to 95730303 20 + TSS region transcription start site region 95373
Tssr95374 10 95730318 to 95730332 14 + TSS region transcription start site region 95374
Tssr95375 10 95730334 to 95730337 3 + TSS region transcription start site region 95375
Tssr95376 10 95746066 to 95746092 26 + TSS region transcription start site region 95376
Tssr3330 10 95766829 to 95766854 25 + TSS region transcription start site region 3330
Tssr99062 10 95767759 to 95767774 15 - TSS region transcription start site region 99062
Tssr99063 10 95768069 to 95768087 18 - TSS region transcription start site region 99063
4732465J04Rik 10 95773133 to 95794984 21851 + lincRNA gene RIKEN cDNA 4732465J04 gene
Tssr99064 10 95773644 to 95773661 17 - TSS region transcription start site region 99064
Tssr95377 10 95773830 to 95773835 5 + TSS region transcription start site region 95377
Tssr95378 10 95778901 to 95778927 26 + TSS region transcription start site region 95378
Tssr99065 10 95778945 to 95778982 37 - TSS region transcription start site region 99065
Tssr95379 10 95778948 to 95778955 7 + TSS region transcription start site region 95379
Tssr99066 10 95779704 to 95779715 11 - TSS region transcription start site region 99066
Tssr95380 10 95779980 to 95779991 11 + TSS region transcription start site region 95380
Tssr95381 10 95782652 to 95782682 30 + TSS region transcription start site region 95381
Tssr95382 10 95801211 to 95801213 2 + TSS region transcription start site region 95382
Tssr3331 10 95808916 to 95808917 1 - TSS region transcription start site region 3331
Gm47718 10 95811337 to 95817895 6558 - lincRNA gene predicted gene, 47718
Gm33377 10 95817321 to 95896811 79490 + lncRNA gene predicted gene, 33377
Gm47719 10 95817570 to 95849118 31548 + lincRNA gene predicted gene, 47719
Gm33543 10 95823973 to 95842930 18957 - lncRNA gene predicted gene, 33543
Tssr99067 10 95825151 to 95825155 4 - TSS region transcription start site region 99067
Tssr99068 10 95842886 to 95842893 7 - TSS region transcription start site region 99068
Tssr99069 10 95842904 to 95842915 11 - TSS region transcription start site region 99069
Tssr99070 10 95842924 to 95842946 22 - TSS region transcription start site region 99070
Gm47724 10 95870483 to 95870799 316 - pseudogene predicted gene, 47724
Tssr95383 10 95892512 to 95892528 16 + TSS region transcription start site region 95383
Gm47725 10 95893443 to 95897257 3814 + lincRNA gene predicted gene, 47725
Tssr95384 10 95893481 to 95893508 27 + TSS region transcription start site region 95384
Gm24433 10 95898603 to 95898735 132 + snoRNA gene predicted gene, 24433
Cpgi2145 10 95940243 to 95941469 1226 CpG island CpG island 2145
Eea1 10 95940661 to 96045518 104857 + protein coding gene early endosome antigen 1
Tssr95385 10 95940681 to 95940703 22 + TSS region transcription start site region 95385
Tssr95386 10 95940704 to 95940772 68 + TSS region transcription start site region 95386
Tssr95387 10 95940858 to 95940875 17 + TSS region transcription start site region 95387
Tssr95388 10 95941054 to 95941071 17 + TSS region transcription start site region 95388
Tssr95389 10 95943438 to 95943443 5 + TSS region transcription start site region 95389