Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:89513328-90713332

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nr1h4 10 89454234 to 89533585 79351 - protein coding gene nuclear receptor subfamily 1, group H, member 4
Tssr98875 10 89533529 to 89533541 12 - TSS region transcription start site region 98875
Tssr98876 10 89533550 to 89533590 40 - TSS region transcription start site region 98876
Tssr98877 10 89533591 to 89533635 44 - TSS region transcription start site region 98877
Tssr98878 10 89548228 to 89548251 23 - TSS region transcription start site region 98878
Gm48087 10 89555083 to 89555719 636 - pseudogene predicted gene, 48087
Slc17a8 10 89574020 to 89621249 47229 - protein coding gene solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8
Tssr98879 10 89592926 to 89592952 26 - TSS region transcription start site region 98879
Tssr98880 10 89600692 to 89600719 27 - TSS region transcription start site region 98880
Tssr98881 10 89621219 to 89621237 18 - TSS region transcription start site region 98881
Tssr98882 10 89621263 to 89621275 12 - TSS region transcription start site region 98882
Tssr98883 10 89621279 to 89621290 11 - TSS region transcription start site region 98883
Tssr98884 10 89621429 to 89621464 35 - TSS region transcription start site region 98884
Tssr98885 10 89632008 to 89632019 11 - TSS region transcription start site region 98885
Scyl2 10 89638721 to 89686285 47564 - protein coding gene SCY1-like 2 (S. cerevisiae)
Tssr98886 10 89647023 to 89647035 12 - TSS region transcription start site region 98886
Tssr98887 10 89674190 to 89674195 5 - TSS region transcription start site region 98887
Cpgi2091 10 89685606 to 89686491 885 CpG island CpG island 2091
Tssr98888 10 89686197 to 89686214 17 - TSS region transcription start site region 98888
Tssr98889 10 89686219 to 89686244 25 - TSS region transcription start site region 98889
Tssr98890 10 89686250 to 89686306 56 - TSS region transcription start site region 98890
Tssr95178 10 89686365 to 89686421 56 + TSS region transcription start site region 95178
1500026H17Rik 10 89686371 to 89700866 14495 + bidirectional promoter lncRNA gene RIKEN cDNA 1500026H17 gene
Actr6 10 89711971 to 89732295 20324 - protein coding gene ARP6 actin-related protein 6
Cpgi2092 10 89731922 to 89732693 771 CpG island CpG island 2092
Tssr98891 10 89732253 to 89732324 71 - TSS region transcription start site region 98891
Gm30963 10 89736777 to 89741413 4636 - lncRNA gene predicted gene, 30963
Tssr98892 10 89741214 to 89741236 22 - TSS region transcription start site region 98892
E330037I15Rik 10 89743616 to 89745818 2202 unclassified gene RIKEN cDNA E330037I15 gene
Cpgi2093 10 89744811 to 89745868 1057 CpG island CpG island 2093
Tssr95179 10 89744988 to 89745022 34 + TSS region transcription start site region 95179
Uhrf1bp1l 10 89744991 to 89819871 74880 + protein coding gene UHRF1 (ICBP90) binding protein 1-like
Tssr98893 10 89745772 to 89745778 6 - TSS region transcription start site region 98893
Tssr98894 10 89745795 to 89745807 12 - TSS region transcription start site region 98894
Tssr98895 10 89745809 to 89745823 14 - TSS region transcription start site region 98895
Tssr95180 10 89750981 to 89750985 4 + TSS region transcription start site region 95180
Tssr95181 10 89781169 to 89781185 16 + TSS region transcription start site region 95181
Tssr95182 10 89785837 to 89785841 4 + TSS region transcription start site region 95182
Gm31090 10 89812159 to 89813893 1734 + lncRNA gene predicted gene, 31090
Gm26180 10 89821340 to 89821446 106 - snRNA gene predicted gene, 26180
Gm46238 10 89822878 to 89826535 3657 + protein coding gene predicted gene, 46238
Cpgi2094 10 89872550 to 89873886 1336 CpG island CpG island 2094
Tssr3313 10 89872922 to 89872943 21 + TSS region transcription start site region 3313
Tssr95183 10 89872959 to 89872973 14 + TSS region transcription start site region 95183
Tssr95184 10 89872977 to 89872998 21 + TSS region transcription start site region 95184
Tssr95185 10 89873008 to 89873058 50 + TSS region transcription start site region 95185
Tssr95186 10 89873241 to 89873252 11 + TSS region transcription start site region 95186
Tssr95187 10 89873482 to 89873492 10 + TSS region transcription start site region 95187
Tssr95188 10 89873497 to 89873516 19 + TSS region transcription start site region 95188
Anks1b 10 89873509 to 90973300 1099791 + protein coding gene ankyrin repeat and sterile alpha motif domain containing 1B
Gm4184 10 89878269 to 89878601 332 + protein coding gene predicted gene 4184
Tssr95189 10 89916373 to 89916385 12 + TSS region transcription start site region 95189
Cpgi2095 10 90049813 to 90050192 379 CpG island CpG island 2095
Tssr95190 10 90071011 to 90071015 4 + TSS region transcription start site region 95190
Tssr95191 10 90071095 to 90071117 22 + TSS region transcription start site region 95191
Tssr3314 10 90113328 to 90113332 4 + TSS region transcription start site region 3314
Gm5780 10 90132984 to 90134817 1833 - pseudogene predicted gene 5780
Cpgi2096 10 90135111 to 90135431 320 CpG island CpG island 2096
Tssr95192 10 90314752 to 90314756 4 + TSS region transcription start site region 95192
Tssr95193 10 90365198 to 90365238 40 + TSS region transcription start site region 95193
C230047L17Rik 10 90426587 to 90428054 1467 unclassified gene RIKEN cDNA C230047L17 gene
Gm22602 10 90450910 to 90451004 94 + snRNA gene predicted gene, 22602
D10Mit9 10 90467091 to 90467247 156 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 9
D10Mit313 10 90544911 to 90545032 121 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-313
Tssr95194 10 90576471 to 90576483 12 + TSS region transcription start site region 95194
Tssr95195 10 90576659 to 90576668 9 + TSS region transcription start site region 95195
Tssr95196 10 90576678 to 90576689 11 + TSS region transcription start site region 95196
Tssr95197 10 90576708 to 90576764 56 + TSS region transcription start site region 95197
Tssr95198 10 90576777 to 90576784 7 + TSS region transcription start site region 95198
Tssr95199 10 90576872 to 90576887 15 + TSS region transcription start site region 95199
Tssr3315 10 90577018 to 90577023 5 + TSS region transcription start site region 3315
Tssr98896 10 90587154 to 90587186 32 - TSS region transcription start site region 98896
2900018E21Rik 10 90597632 to 90599160 1528 unclassified gene RIKEN cDNA 2900018E21 gene
Tssr95200 10 90632068 to 90632071 3 + TSS region transcription start site region 95200
Ltpr5a 10 90671039 to 90671185 146 QTL Leishmania tropica response 5a
D10Mit67 10 90671039 to 90671185 146 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 67
D10Mit161 10 90697913 to 90698047 134 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 161
Ltpr5 10 125739363 to 90671039 -35068324 QTL Leishmania tropica response 5