Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:85859340-86111889

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49 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr94935 10 85871403 to 85871407 4 + TSS region transcription start site region 94935
Cpgi2058 10 85871727 to 85872470 743 CpG island CpG island 2058
Tssr94936 10 85871815 to 85871898 83 + TSS region transcription start site region 94936
Pwp1 10 85871831 to 85889103 17272 + protein coding gene PWP1 homolog, endonuclein
Tssr94937 10 85871904 to 85871919 15 + TSS region transcription start site region 94937
Prdm4 10 85891966 to 85917142 25176 - protein coding gene PR domain containing 4
Cpgi2059 10 85916320 to 85917351 1031 CpG island CpG island 2059
Tssr98752 10 85916902 to 85917006 104 - TSS region transcription start site region 98752
Tssr98753 10 85917069 to 85917099 30 - TSS region transcription start site region 98753
Tssr98754 10 85917162 to 85917191 29 - TSS region transcription start site region 98754
Tssr94938 10 85927400 to 85927408 8 + TSS region transcription start site region 94938
Tssr3300 10 85927978 to 85927981 3 + TSS region transcription start site region 3300
Cpgi2060 10 85928067 to 85928971 904 CpG island CpG island 2060
Ascl4 10 85928491 to 85929647 1156 + protein coding gene achaete-scute family bHLH transcription factor 4
Tssr94939 10 85929082 to 85929087 5 + TSS region transcription start site region 94939
D10Mit228 10 85929187 to 85929302 115 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 228
Rtcb 10 85938637 to 85957793 19156 - protein coding gene RNA 2',3'-cyclic phosphate and 5'-OH ligase
Gm48175 10 85954960 to 85955139 179 + pseudogene predicted gene, 48175
Cpgi2061 10 85957056 to 85957931 875 CpG island CpG island 2061
Tssr98755 10 85957735 to 85957761 26 - TSS region transcription start site region 98755
Tssr98756 10 85957775 to 85957818 43 - TSS region transcription start site region 98756
Bpifc 10 85959340 to 86011889 52549 - protein coding gene BPI fold containing family C
Tssr98757 10 85993509 to 85993527 18 - TSS region transcription start site region 98757
Tssr98758 10 86011833 to 86011896 63 - TSS region transcription start site region 98758
A230060F14Rik 10 86020441 to 86022329 1888 - antisense lncRNA gene RIKEN cDNA A230060F14 gene
Cpgi2062 10 86021424 to 86022528 1104 CpG island CpG island 2062
Fbxo7 10 86021875 to 86048336 26461 + protein coding gene F-box protein 7
Tssr94940 10 86021881 to 86021954 73 + TSS region transcription start site region 94940
Tssr94941 10 86021961 to 86021991 30 + TSS region transcription start site region 94941
Tssr94942 10 86021993 to 86022015 22 + TSS region transcription start site region 94942
Tssr94943 10 86022018 to 86022027 9 + TSS region transcription start site region 94943
Tssr94944 10 86022103 to 86022128 25 + TSS region transcription start site region 94944
Tssr94945 10 86022208 to 86022253 45 + TSS region transcription start site region 94945
Tssr94946 10 86032819 to 86032829 10 + TSS region transcription start site region 94946
Tssr94947 10 86032962 to 86032976 14 + TSS region transcription start site region 94947
Tssr94948 10 86032994 to 86033006 12 + TSS region transcription start site region 94948
Tssr94949 10 86033022 to 86033030 8 + TSS region transcription start site region 94949
Tssr94950 10 86033038 to 86033043 5 + TSS region transcription start site region 94950
Tssr94951 10 86033057 to 86033068 11 + TSS region transcription start site region 94951
Gm24430 10 86038685 to 86038788 103 - snRNA gene predicted gene, 24430
Tssr94952 10 86039958 to 86040005 47 + TSS region transcription start site region 94952
Syn3 10 86055125 to 86498896 443771 - protein coding gene synapsin III
Tssr98759 10 86057618 to 86057631 13 - TSS region transcription start site region 98759
Tssr98760 10 86057635 to 86057648 13 - TSS region transcription start site region 98760
Tssr94953 10 86068190 to 86068201 11 + TSS region transcription start site region 94953
D10Mit93 10 86078455 to 86078590 135 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 93
Tssr94954 10 86095836 to 86095860 24 + TSS region transcription start site region 94954
4930486F22Rik 10 86095859 to 86113586 17727 + antisense lncRNA gene RIKEN cDNA 4930486F22 gene
Tssr98761 10 86102161 to 86102166 5 - TSS region transcription start site region 98761