Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:84615003-85755069

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm17249 10 84618341 to 84622578 4237 - bidirectional promoter lncRNA gene predicted gene, 17249
Cpgi2044 10 84622204 to 84622801 597 CpG island CpG island 2044
Tssr94902 10 84622280 to 84622303 23 + TSS region transcription start site region 94902
Polr3b 10 84622293 to 84727178 104885 + protein coding gene polymerase (RNA) III (DNA directed) polypeptide B
Tssr94903 10 84622312 to 84622360 48 + TSS region transcription start site region 94903
Tssr94904 10 84622365 to 84622410 45 + TSS region transcription start site region 94904
Tssr94905 10 84639745 to 84639769 24 + TSS region transcription start site region 94905
Tssr94906 10 84646606 to 84646655 49 + TSS region transcription start site region 94906
Tssr94907 10 84652600 to 84652601 1 + TSS region transcription start site region 94907
Tssr94908 10 84708182 to 84708187 5 + TSS region transcription start site region 94908
D10Dcr9 10 84729750 to 84729845 95 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 9
Cpgi2045 10 84754651 to 84756434 1783 CpG island CpG island 2045
Tssr94909 10 84756033 to 84756047 14 + TSS region transcription start site region 94909
Tssr94910 10 84756055 to 84756084 29 + TSS region transcription start site region 94910
Rfx4 10 84756062 to 84906538 150476 + protein coding gene regulatory factor X, 4 (influences HLA class II expression)
Tssr94911 10 84756150 to 84756164 14 + TSS region transcription start site region 94911
Tssr94912 10 84756186 to 84756197 11 + TSS region transcription start site region 94912
Cpgi2046 10 84756552 to 84757482 930 CpG island CpG island 2046
Cpgi2047 10 84758748 to 84759457 709 CpG island CpG island 2047
Cpgi2048 10 84759942 to 84760357 415 CpG island CpG island 2048
Tssr94913 10 84762212 to 84762246 34 + TSS region transcription start site region 94913
Tssr98735 10 84794742 to 84794753 11 - TSS region transcription start site region 98735
Gm40728 10 84797949 to 84863288 65339 - lncRNA gene predicted gene, 40728
Gm24226 10 84811087 to 84811183 96 - snRNA gene predicted gene, 24226
Tssr94914 10 84838103 to 84838134 31 + TSS region transcription start site region 94914
Tssr94915 10 84838143 to 84838153 10 + TSS region transcription start site region 94915
Tssr94916 10 84838160 to 84838174 14 + TSS region transcription start site region 94916
Tssr94917 10 84839067 to 84839068 1 + TSS region transcription start site region 94917
Cpgi2049 10 84844658 to 84844814 156 CpG island CpG island 2049
Cpgi2050 10 84917119 to 84918112 993 CpG island CpG island 2050
Tssr94918 10 84917269 to 84917295 26 + TSS region transcription start site region 94918
Tssr94919 10 84917556 to 84917594 38 + TSS region transcription start site region 94919
Ric8b 10 84917616 to 85018337 100721 + protein coding gene RIC8 guanine nucleotide exchange factor B
Tssr94920 10 84917619 to 84917655 36 + TSS region transcription start site region 94920
Tssr94921 10 84917657 to 84917692 35 + TSS region transcription start site region 94921
Tssr94922 10 84917703 to 84917716 13 + TSS region transcription start site region 94922
Gm34633 10 84987715 to 85003655 15940 - lncRNA gene predicted gene, 34633
Tssr98736 10 85003640 to 85003665 25 - TSS region transcription start site region 98736
Fhl4 10 85097019 to 85102495 5476 - protein coding gene four and a half LIM domains 4
Tssr98737 10 85099408 to 85099428 20 - TSS region transcription start site region 98737
Cpgi2051 10 85102118 to 85103748 1630 CpG island CpG island 2051
Tssr98738 10 85102425 to 85102434 9 - TSS region transcription start site region 98738
Tssr98739 10 85102441 to 85102471 30 - TSS region transcription start site region 98739
Tssr98740 10 85102487 to 85102549 62 - TSS region transcription start site region 98740
Tssr98741 10 85102552 to 85102565 13 - TSS region transcription start site region 98741
Tssr3298 10 85102588 to 85102607 19 + TSS region transcription start site region 3298
Tmem263 10 85102627 to 85117747 15120 + protein coding gene transmembrane protein 263
Tssr94923 10 85102697 to 85102719 22 + TSS region transcription start site region 94923
Tssr94924 10 85102737 to 85102748 11 + TSS region transcription start site region 94924
Tssr94925 10 85102758 to 85102833 75 + TSS region transcription start site region 94925
Tssr3299 10 85102842 to 85102847 5 + TSS region transcription start site region 3299
Tssr98742 10 85103657 to 85103664 7 - TSS region transcription start site region 98742
Tssr94926 10 85115986 to 85115994 8 + TSS region transcription start site region 94926
Mterf2 10 85119433 to 85128027 8594 - protein coding gene mitochondrial transcription termination factor 2
Cpgi2052 10 85127868 to 85128161 293 CpG island CpG island 2052
Tssr98743 10 85127977 to 85128035 58 - TSS region transcription start site region 98743
Cry1 10 85131700 to 85185054 53354 - protein coding gene cryptochrome 1 (photolyase-like)
Cpgi2053 10 85184014 to 85185712 1698 CpG island CpG island 2053
Tssr98744 10 85184663 to 85184688 25 - TSS region transcription start site region 98744
Tssr98745 10 85185003 to 85185069 66 - TSS region transcription start site region 98745
Tssr94927 10 85185136 to 85185161 25 + TSS region transcription start site region 94927
Tssr98746 10 85198426 to 85198440 14 - TSS region transcription start site region 98746
Gm38575 10 85220942 to 85266392 45450 - lncRNA gene predicted gene, 38575
Tssr98747 10 85266304 to 85266330 26 - TSS region transcription start site region 98747
Tssr98748 10 85266334 to 85266354 20 - TSS region transcription start site region 98748
Gm27392 10 85284233 to 85284333 100 - miRNA gene predicted gene, 27392
Gm8394 10 85313488 to 85314439 951 + pseudogene predicted gene 8394
Gm34712 10 85332687 to 85347566 14879 - lncRNA gene predicted gene, 34712
Gm25281 10 85333901 to 85334004 103 + miRNA gene predicted gene, 25281
Gm40730 10 85339013 to 85339952 939 + lncRNA gene predicted gene, 40730
Cpgi2054 10 85386637 to 85388721 2084 CpG island CpG island 2054
Tssr94928 10 85386813 to 85386846 33 + TSS region transcription start site region 94928
Btbd11 10 85386814 to 85660292 273478 + protein coding gene BTB (POZ) domain containing 11
Tssr94929 10 85386848 to 85386860 12 + TSS region transcription start site region 94929
Tssr94930 10 85538583 to 85538627 44 + TSS region transcription start site region 94930
Tssr98749 10 85539511 to 85539524 13 - TSS region transcription start site region 98749
Tssr94931 10 85540164 to 85540202 38 + TSS region transcription start site region 94931
Tssr98750 10 85540441 to 85540447 6 - TSS region transcription start site region 98750
Tssr98751 10 85541603 to 85541616 13 - TSS region transcription start site region 98751
Gm40731 10 85578876 to 85583988 5112 - lncRNA gene predicted gene, 40731
Cpgi2055 10 85598200 to 85599057 857 CpG island CpG island 2055
Tssr94932 10 85598726 to 85598755 29 + TSS region transcription start site region 94932
D10Mit261 10 85619118 to 85619227 109 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 261
Cpgi2056 10 85624790 to 85625157 367 CpG island CpG island 2056
Gm47358 10 85707680 to 85712368 4688 + lincRNA gene predicted gene, 47358
Gm6713 10 85709327 to 85710772 1445 - protein coding gene predicted gene 6713
Gm6714 10 85726612 to 85728452 1840 - pseudogene predicted gene 6714
Gm21026 10 85730755 to 85732099 1344 - pseudogene predicted gene, 21026
D10Mit159 10 85734723 to 85734871 148 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 159
Gm40732 10 85739703 to 85740339 636 - lncRNA gene predicted gene, 40732
Gm47362 10 85744174 to 85745068 894 - pseudogene predicted gene, 47362
Gm47363 10 85745403 to 85745951 548 - pseudogene predicted gene, 47363
Cia29 10 118661448 to 85619118 -33042330 QTL collagen induced arthritis QTL 29