Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:84337531-84807548

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi2040 10 84347047 to 84347203 156 CpG island CpG island 2040
Nuak1 10 84370900 to 84440471 69571 - protein coding gene NUAK family, SNF1-like kinase, 1
Tssr98712 10 84398655 to 84398667 12 - TSS region transcription start site region 98712
Cpgi2041 10 84440015 to 84441576 1561 CpG island CpG island 2041
Tssr98713 10 84440505 to 84440517 12 - TSS region transcription start site region 98713
Tssr98714 10 84440536 to 84440547 11 - TSS region transcription start site region 98714
Tssr98715 10 84440591 to 84440604 13 - TSS region transcription start site region 98715
Tssr98716 10 84440610 to 84440619 9 - TSS region transcription start site region 98716
Tssr98717 10 84440623 to 84440630 7 - TSS region transcription start site region 98717
Tssr98718 10 84440639 to 84440650 11 - TSS region transcription start site region 98718
Tssr98719 10 84440651 to 84440658 7 - TSS region transcription start site region 98719
Tssr98720 10 84440659 to 84440675 16 - TSS region transcription start site region 98720
Tssr98721 10 84440685 to 84440705 20 - TSS region transcription start site region 98721
Gm47962 10 84440826 to 84467009 26183 + bidirectional promoter lncRNA gene predicted gene, 47962
Tssr94888 10 84440826 to 84440850 24 + TSS region transcription start site region 94888
Tssr98722 10 84441300 to 84441360 60 - TSS region transcription start site region 98722
D10Mit208 10 84464592 to 84464742 150 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 208
Tssr94889 10 84488290 to 84488296 6 + TSS region transcription start site region 94889
4930463O16Rik 10 84488293 to 84497435 9142 + lincRNA gene RIKEN cDNA 4930463O16 gene
1700092E16Rik 10 84498874 to 84499626 752 + unclassified non-coding RNA gene RIKEN cDNA 1700092E16 gene
Gm34405 10 84500044 to 84517102 17058 - lncRNA gene predicted gene, 34405
Gm18251 10 84502032 to 84502269 237 - pseudogene predicted gene, 18251
Tssr94890 10 84516710 to 84516715 5 + TSS region transcription start site region 94890
Tssr3295 10 84517771 to 84517787 16 + TSS region transcription start site region 3295
Tssr94891 10 84517987 to 84518005 18 + TSS region transcription start site region 94891
E230014E18Rik 10 84518045 to 84523270 5225 + lincRNA gene RIKEN cDNA E230014E18 gene
Ckap4 10 84526305 to 84533888 7583 - protein coding gene cytoskeleton-associated protein 4
Tssr98723 10 84526833 to 84526844 11 - TSS region transcription start site region 98723
Tssr98724 10 84526972 to 84526987 15 - TSS region transcription start site region 98724
Tssr98725 10 84527343 to 84527367 24 - TSS region transcription start site region 98725
Tssr98726 10 84527587 to 84527609 22 - TSS region transcription start site region 98726
Tssr98727 10 84527704 to 84527719 15 - TSS region transcription start site region 98727
Cpgi2042 10 84533106 to 84534675 1569 CpG island CpG island 2042
Tssr98728 10 84533884 to 84533896 12 - TSS region transcription start site region 98728
Tssr98729 10 84533901 to 84533913 12 - TSS region transcription start site region 98729
Tssr98730 10 84533939 to 84533950 11 - TSS region transcription start site region 98730
Tssr98731 10 84533968 to 84534029 61 - TSS region transcription start site region 98731
Tssr94892 10 84534176 to 84534215 39 + TSS region transcription start site region 94892
Platr7 10 84547417 to 84553338 5921 - lincRNA gene pluripotency associated transcript 7
Tssr94893 10 84550078 to 84550086 8 + TSS region transcription start site region 94893
Tssr98732 10 84551964 to 84551992 28 - TSS region transcription start site region 98732
Tssr98733 10 84554351 to 84554353 2 - TSS region transcription start site region 98733
Tssr94894 10 84554842 to 84554850 8 + TSS region transcription start site region 94894
Tssr3296 10 84556207 to 84556240 33 - TSS region transcription start site region 3296
Tssr94895 10 84556412 to 84556434 22 + TSS region transcription start site region 94895
Tssr94896 10 84556459 to 84556464 5 + TSS region transcription start site region 94896
Gm34515 10 84572321 to 84575068 2747 + lncRNA gene predicted gene, 34515
Tssr94897 10 84572531 to 84572548 17 + TSS region transcription start site region 94897
Tssr98734 10 84576144 to 84576155 11 - TSS region transcription start site region 98734
Cpgi2043 10 84576164 to 84577615 1451 CpG island CpG island 2043
Tssr94898 10 84576883 to 84576904 21 + TSS region transcription start site region 94898
Tcp11l2 10 84576947 to 84614355 37408 + protein coding gene t-complex 11 (mouse) like 2
Tssr94899 10 84584651 to 84584662 11 + TSS region transcription start site region 94899
Tssr94900 10 84584858 to 84584868 10 + TSS region transcription start site region 94900
Tssr3297 10 84599527 to 84599530 3 + TSS region transcription start site region 3297
Tssr94901 10 84608548 to 84608587 39 + TSS region transcription start site region 94901
Gm25657 10 84614719 to 84614813 94 + snRNA gene predicted gene, 25657
Gm17249 10 84618341 to 84622578 4237 - bidirectional promoter lncRNA gene predicted gene, 17249
Cpgi2044 10 84622204 to 84622801 597 CpG island CpG island 2044
Tssr94902 10 84622280 to 84622303 23 + TSS region transcription start site region 94902
Polr3b 10 84622293 to 84727178 104885 + protein coding gene polymerase (RNA) III (DNA directed) polypeptide B
Tssr94903 10 84622312 to 84622360 48 + TSS region transcription start site region 94903
Tssr94904 10 84622365 to 84622410 45 + TSS region transcription start site region 94904
Tssr94905 10 84639745 to 84639769 24 + TSS region transcription start site region 94905
Tssr94906 10 84646606 to 84646655 49 + TSS region transcription start site region 94906
Tssr94907 10 84652600 to 84652601 1 + TSS region transcription start site region 94907
Tssr94908 10 84708182 to 84708187 5 + TSS region transcription start site region 94908
D10Dcr9 10 84729750 to 84729845 95 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 9
Cpgi2045 10 84754651 to 84756434 1783 CpG island CpG island 2045
Tssr94909 10 84756033 to 84756047 14 + TSS region transcription start site region 94909
Tssr94910 10 84756055 to 84756084 29 + TSS region transcription start site region 94910
Rfx4 10 84756062 to 84906538 150476 + protein coding gene regulatory factor X, 4 (influences HLA class II expression)
Tssr94911 10 84756150 to 84756164 14 + TSS region transcription start site region 94911
Tssr94912 10 84756186 to 84756197 11 + TSS region transcription start site region 94912
Cpgi2046 10 84756552 to 84757482 930 CpG island CpG island 2046
Cpgi2047 10 84758748 to 84759457 709 CpG island CpG island 2047
Cpgi2048 10 84759942 to 84760357 415 CpG island CpG island 2048
Tssr94913 10 84762212 to 84762246 34 + TSS region transcription start site region 94913
Tssr98735 10 84794742 to 84794753 11 - TSS region transcription start site region 98735
Gm40728 10 84797949 to 84863288 65339 - lncRNA gene predicted gene, 40728