Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:84083200-84503203

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55 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scfpq1 10 12828307 to 84243920 71415613 QTL subcutaneous fat pad percentage QTL 1
Hrtq3 10 12828307 to 84243920 71415613 QTL heart weight QTL 3
W3q11 10 12828307 to 84243920 71415613 QTL weight 3 weeks QTL 11
W10q5 10 12828307 to 84243920 71415613 QTL weight 10 weeks QTL 5
Kidpq2 10 12828307 to 84243920 71415613 QTL kidney weight percentage QTL 2
Lvrq4 10 12828307 to 84243920 71415613 QTL liver weight QTL 4
W6q6 10 12828307 to 84243920 71415613 QTL weight 6 weeks QTL 6
Egq7 10 12828307 to 84243920 71415613 QTL early growth QTL 7
Gm34184 10 84036560 to 84100697 64137 - lincRNA gene predicted gene, 34184
Gm34113 10 84092266 to 84096249 3983 + lincRNA gene predicted gene, 34113
Gm40727 10 84104377 to 84110424 6047 - lncRNA gene predicted gene, 40727
Tssr94884 10 84110057 to 84110062 5 + TSS region transcription start site region 94884
D10Mit132b 10 84163020 to 84163351 331 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 132b
D10Mit132a 10 84163020 to 84163162 142 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 132a
Cpgi2039 10 84164908 to 84165147 239 CpG island CpG island 2039
Gm47253 10 84191820 to 84222057 30237 - lincRNA gene predicted gene, 47253
Tssr94885 10 84206659 to 84206660 1 + TSS region transcription start site region 94885
D10Mit65 10 84243786 to 84243920 134 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 65
Tssr3294 10 84293200 to 84293203 3 - TSS region transcription start site region 3294
D10Mit201 10 84304735 to 84304891 156 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 201
D10Mit131 10 84304762 to 84304904 142 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 131
D10Mit131.1 10 84304862 to 84305057 195 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 131.1
Tssr94886 10 84308824 to 84308843 19 + TSS region transcription start site region 94886
Tssr94887 10 84308847 to 84308858 11 + TSS region transcription start site region 94887
Gm5425 10 84308886 to 84309344 458 + pseudogene predicted gene 5425
Gm46201 10 84317320 to 84335749 18429 - lncRNA gene predicted gene, 46201
Cpgi2040 10 84347047 to 84347203 156 CpG island CpG island 2040
Nuak1 10 84370900 to 84440471 69571 - protein coding gene NUAK family, SNF1-like kinase, 1
Tssr98712 10 84398655 to 84398667 12 - TSS region transcription start site region 98712
Cpgi2041 10 84440015 to 84441576 1561 CpG island CpG island 2041
Tssr98713 10 84440505 to 84440517 12 - TSS region transcription start site region 98713
Tssr98714 10 84440536 to 84440547 11 - TSS region transcription start site region 98714
Tssr98715 10 84440591 to 84440604 13 - TSS region transcription start site region 98715
Tssr98716 10 84440610 to 84440619 9 - TSS region transcription start site region 98716
Tssr98717 10 84440623 to 84440630 7 - TSS region transcription start site region 98717
Tssr98718 10 84440639 to 84440650 11 - TSS region transcription start site region 98718
Tssr98719 10 84440651 to 84440658 7 - TSS region transcription start site region 98719
Tssr98720 10 84440659 to 84440675 16 - TSS region transcription start site region 98720
Tssr98721 10 84440685 to 84440705 20 - TSS region transcription start site region 98721
Gm47962 10 84440826 to 84467009 26183 + bidirectional promoter lncRNA gene predicted gene, 47962
Tssr94888 10 84440826 to 84440850 24 + TSS region transcription start site region 94888
Tssr98722 10 84441300 to 84441360 60 - TSS region transcription start site region 98722
D10Mit208 10 84464592 to 84464742 150 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 208
Tssr94889 10 84488290 to 84488296 6 + TSS region transcription start site region 94889
4930463O16Rik 10 84488293 to 84497435 9142 + lincRNA gene RIKEN cDNA 4930463O16 gene
1700092E16Rik 10 84498874 to 84499626 752 + unclassified non-coding RNA gene RIKEN cDNA 1700092E16 gene
Gm34405 10 84500044 to 84517102 17058 - lncRNA gene predicted gene, 34405
Gm18251 10 84502032 to 84502269 237 - pseudogene predicted gene, 18251
Estoq3 10 122205623 to 84243786 -37961837 QTL embryo survival total QTL 3
Espq3 10 122205623 to 84243786 -37961837 QTL embryo survival preimplantation QTL 3
Lgaq5 10 122205623 to 84243786 -37961837 QTL late growth adjusted QTL 5
Tesq3 10 122205623 to 84243786 -37961837 QTL testis weight QTL 3
Egq9 10 122205623 to 84243786 -37961837 QTL early growth QTL 9
W6q8 10 122205623 to 84243786 -37961837 QTL weight 6 weeks QTL 8
W10q8 10 122205623 to 84243786 -37961837 QTL weight 10 weeks QTL 8