Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:61746100-62102580

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46 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
H2afy2 10 61738640 to 61784103 45463 - protein coding gene H2A histone family, member Y2
Cpgi1616 10 61753108 to 61753529 421 CpG island CpG island 1616
Mir5108 10 61774737 to 61774821 84 + miRNA gene microRNA 5108
Gm2137 10 61782027 to 61784552 2525 + protein coding gene predicted gene 2137
Cpgi1617 10 61782726 to 61784442 1716 CpG island CpG island 1617
Tssr93682 10 61782950 to 61782973 23 + TSS region transcription start site region 93682
Tssr93683 10 61783247 to 61783277 30 + TSS region transcription start site region 93683
Tssr3217 10 61783827 to 61783841 14 - TSS region transcription start site region 3217
Tssr97776 10 61783921 to 61783959 38 - TSS region transcription start site region 97776
Tssr97777 10 61783961 to 61783974 13 - TSS region transcription start site region 97777
Tssr97778 10 61784014 to 61784017 3 - TSS region transcription start site region 97778
Tssr97779 10 61784334 to 61784350 16 - TSS region transcription start site region 97779
Tssr97780 10 61784461 to 61784463 2 - TSS region transcription start site region 97780
Tssr3218 10 61784580 to 61784601 21 - TSS region transcription start site region 3218
D10Mit196 10 61787202 to 61787404 202 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 196
Col13a1 10 61838236 to 61979108 140872 - protein coding gene collagen, type XIII, alpha 1
Gm40674 10 61844488 to 61874240 29752 + lncRNA gene predicted gene, 40674
Tssr93684 10 61845711 to 61845732 21 + TSS region transcription start site region 93684
Tssr93685 10 61845754 to 61845764 10 + TSS region transcription start site region 93685
Tssr97781 10 61874865 to 61874879 14 - TSS region transcription start site region 97781
Tssr3219 10 61881955 to 61881956 1 - TSS region transcription start site region 3219
Gm30121 10 61916100 to 61932580 16480 + lncRNA gene predicted gene, 30121
8030450C14Rik 10 61931536 to 61932323 787 unclassified gene RIKEN cDNA 8030450C14 gene
Tssr93686 10 61959601 to 61959608 7 + TSS region transcription start site region 93686
Gm5750 10 61959624 to 61960424 800 + pseudogene predicted gene 5750
Cpgi1618 10 61977659 to 61979619 1960 CpG island CpG island 1618
Tssr97782 10 61979076 to 61979108 32 - TSS region transcription start site region 97782
Tssr97783 10 61979113 to 61979136 23 - TSS region transcription start site region 97783
Tssr97784 10 61979144 to 61979161 17 - TSS region transcription start site region 97784
Gm47919 10 62023404 to 62025615 2211 + unclassified gene predicted gene, 47919
Tssr3220 10 62055382 to 62055387 5 + TSS region transcription start site region 3220
Tssr93687 10 62066615 to 62066639 24 + TSS region transcription start site region 93687
D10Mit149 10 62067128 to 62067270 142 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 149
Tssr93688 10 62071014 to 62071020 6 + TSS region transcription start site region 93688
Gm5424 10 62071123 to 62072362 1239 + pseudogene predicted gene 5424
Tssr93689 10 62071267 to 62071293 26 + TSS region transcription start site region 93689
Tssr93690 10 62071451 to 62071460 9 + TSS region transcription start site region 93690
Tssr93691 10 62071507 to 62071535 28 + TSS region transcription start site region 93691
Tssr93692 10 62071589 to 62071608 19 + TSS region transcription start site region 93692
Tssr97785 10 62071620 to 62071668 48 - TSS region transcription start site region 97785
Tssr93693 10 62071659 to 62071686 27 + TSS region transcription start site region 93693
Tssr93694 10 62071693 to 62071717 24 + TSS region transcription start site region 93694
Tssr97786 10 62071819 to 62071825 6 - TSS region transcription start site region 97786
Tssr97787 10 62071896 to 62071916 20 - TSS region transcription start site region 97787
Tssr93695 10 62072057 to 62072088 31 + TSS region transcription start site region 93695
Tssr93696 10 62072211 to 62072233 22 + TSS region transcription start site region 93696