Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:61310492-61913565

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95 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pald1 10 61319656 to 61383530 63874 - protein coding gene phosphatase domain containing, paladin 1
D10Mit48 10 61333715 to 61333893 178 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 48
Tssr3215 10 61352006 to 61352008 2 + TSS region transcription start site region 3215
Gm48077 10 61359666 to 61361407 1741 + unclassified gene predicted gene, 48077
Gm48074 10 61379414 to 61381048 1634 - unclassified gene predicted gene, 48074
Cpgi1605 10 61382842 to 61383823 981 CpG island CpG island 1605
Tssr97759 10 61383332 to 61383372 40 - TSS region transcription start site region 97759
Tssr97760 10 61383374 to 61383391 17 - TSS region transcription start site region 97760
Tssr3216 10 61383450 to 61383502 52 - TSS region transcription start site region 3216
Tssr97761 10 61415607 to 61415632 25 - TSS region transcription start site region 97761
Tssr93663 10 61416279 to 61416300 21 + TSS region transcription start site region 93663
Tssr93664 10 61416530 to 61416545 15 + TSS region transcription start site region 93664
Tssr97762 10 61416700 to 61416707 7 - TSS region transcription start site region 97762
Nodal 10 61417972 to 61425337 7365 + protein coding gene nodal
Cpgi1606 10 61418208 to 61419408 1200 CpG island CpG island 1606
Tssr93665 10 61418283 to 61418289 6 + TSS region transcription start site region 93665
D10Mit112.1 10 61424705 to 61424899 194 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 112.1
D10Mit112 10 61424897 to 61425027 130 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 112
D10Mit112.2 10 61425078 to 61425193 115 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 112.2
Eif4ebp2 10 61428491 to 61452661 24170 - protein coding gene eukaryotic translation initiation factor 4E binding protein 2
Tssr97763 10 61432711 to 61432746 35 - TSS region transcription start site region 97763
Tssr97764 10 61432768 to 61432821 53 - TSS region transcription start site region 97764
Tssr97765 10 61432933 to 61432948 15 - TSS region transcription start site region 97765
Tssr97766 10 61433215 to 61433249 34 - TSS region transcription start site region 97766
Tssr97767 10 61435036 to 61435065 29 - TSS region transcription start site region 97767
A130019P10Rik 10 61440942 to 61442412 1470 unclassified gene RIKEN cDNA A130019P10 gene
Gm48086 10 61446902 to 61450717 3815 - sense intronic lncRNA gene predicted gene, 48086
Cpgi1607 10 61451959 to 61453093 1134 CpG island CpG island 1607
Tssr97768 10 61452418 to 61452434 16 - TSS region transcription start site region 97768
Tssr97769 10 61452772 to 61452813 41 - TSS region transcription start site region 97769
D830039M14Rik 10 61473576 to 61476937 3361 - antisense lncRNA gene RIKEN cDNA D830039M14 gene
Cpgi1608 10 61475327 to 61476756 1429 CpG island CpG island 1608
Tssr93666 10 61475782 to 61475834 52 + TSS region transcription start site region 93666
Lrrc20 10 61475801 to 61582791 106990 + protein coding gene leucine rich repeat containing 20
Tssr97770 10 61476675 to 61476690 15 - TSS region transcription start site region 97770
Tssr93667 10 61482132 to 61482140 8 + TSS region transcription start site region 93667
Tssr93668 10 61482272 to 61482285 13 + TSS region transcription start site region 93668
Gm47595 10 61494917 to 61496290 1373 - antisense lncRNA gene predicted gene, 47595
Gm47593 10 61496600 to 61499601 3001 - antisense lncRNA gene predicted gene, 47593
Gm17829 10 61510242 to 61510585 343 - pseudogene predicted gene, 17829
Gm47594 10 61570911 to 61575064 4153 + unclassified gene predicted gene, 47594
Gm28447 10 61585393 to 61611074 25681 - unclassified non-coding RNA gene predicted gene 28447
4930516E23Rik 10 61591240 to 61592216 976 unclassified gene RIKEN cDNA 4930516E23 gene
Cpgi1609 10 61594923 to 61595543 620 CpG island CpG island 1609
Tssr93669 10 61595293 to 61595297 4 + TSS region transcription start site region 93669
Npffr1 10 61595492 to 61628565 33073 + protein coding gene neuropeptide FF receptor 1
Cpgi1610 10 61613920 to 61614329 409 CpG island CpG island 1610
Cpgi1611 10 61625223 to 61626361 1138 CpG island CpG island 1611
Cpgi1612 10 61648337 to 61649343 1006 CpG island CpG island 1612
Tssr97771 10 61648458 to 61648504 46 - TSS region transcription start site region 97771
Tssr93670 10 61648560 to 61648578 18 + TSS region transcription start site region 93670
Tssr93671 10 61648587 to 61648636 49 + TSS region transcription start site region 93671
Ppa1 10 61648621 to 61674165 25544 + protein coding gene pyrophosphatase (inorganic) 1
Tssr93672 10 61648642 to 61648662 20 + TSS region transcription start site region 93672
Tssr93673 10 61648673 to 61648686 13 + TSS region transcription start site region 93673
1700022H01Rik 10 61674789 to 61680255 5466 - bidirectional promoter lncRNA gene RIKEN cDNA 1700022H01 gene
Cpgi1613 10 61679989 to 61680888 899 CpG island CpG island 1613
Tssr97772 10 61680040 to 61680064 24 - TSS region transcription start site region 97772
Tssr97773 10 61680247 to 61680258 11 - TSS region transcription start site region 97773
Tssr97774 10 61680259 to 61680276 17 - TSS region transcription start site region 97774
Tssr97775 10 61680280 to 61680291 11 - TSS region transcription start site region 97775
Tssr93674 10 61680302 to 61680361 59 + TSS region transcription start site region 93674
Sar1a 10 61680304 to 61693297 12993 + protein coding gene secretion associated Ras related GTPase 1A
Tssr93675 10 61689627 to 61689664 37 + TSS region transcription start site region 93675
Cpgi1614 10 61695127 to 61697118 1991 CpG island CpG island 1614
Tssr93676 10 61695503 to 61695576 73 + TSS region transcription start site region 93676
Tysnd1 10 61695514 to 61702773 7259 + protein coding gene trypsin domain containing 1
Cpgi1615 10 61715109 to 61715587 478 CpG island CpG island 1615
Aifm2 10 61715263 to 61739260 23997 + protein coding gene apoptosis-inducing factor, mitochondrion-associated 2
Tssr93677 10 61715280 to 61715328 48 + TSS region transcription start site region 93677
Tssr93678 10 61720592 to 61720621 29 + TSS region transcription start site region 93678
Tssr93679 10 61726147 to 61726159 12 + TSS region transcription start site region 93679
Tssr93680 10 61726181 to 61726188 7 + TSS region transcription start site region 93680
Tssr93681 10 61733139 to 61733157 18 + TSS region transcription start site region 93681
H2afy2 10 61738640 to 61784103 45463 - protein coding gene H2A histone family, member Y2
Cpgi1616 10 61753108 to 61753529 421 CpG island CpG island 1616
Mir5108 10 61774737 to 61774821 84 + miRNA gene microRNA 5108
Gm2137 10 61782027 to 61784552 2525 + protein coding gene predicted gene 2137
Cpgi1617 10 61782726 to 61784442 1716 CpG island CpG island 1617
Tssr93682 10 61782950 to 61782973 23 + TSS region transcription start site region 93682
Tssr93683 10 61783247 to 61783277 30 + TSS region transcription start site region 93683
Tssr3217 10 61783827 to 61783841 14 - TSS region transcription start site region 3217
Tssr97776 10 61783921 to 61783959 38 - TSS region transcription start site region 97776
Tssr97777 10 61783961 to 61783974 13 - TSS region transcription start site region 97777
Tssr97778 10 61784014 to 61784017 3 - TSS region transcription start site region 97778
Tssr97779 10 61784334 to 61784350 16 - TSS region transcription start site region 97779
Tssr97780 10 61784461 to 61784463 2 - TSS region transcription start site region 97780
Tssr3218 10 61784580 to 61784601 21 - TSS region transcription start site region 3218
D10Mit196 10 61787202 to 61787404 202 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 196
Col13a1 10 61838236 to 61979108 140872 - protein coding gene collagen, type XIII, alpha 1
Gm40674 10 61844488 to 61874240 29752 + lncRNA gene predicted gene, 40674
Tssr93684 10 61845711 to 61845732 21 + TSS region transcription start site region 93684
Tssr93685 10 61845754 to 61845764 10 + TSS region transcription start site region 93685
Tssr97781 10 61874865 to 61874879 14 - TSS region transcription start site region 97781
Tssr3219 10 61881955 to 61881956 1 - TSS region transcription start site region 3219