Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:58400543-59530746

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113 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lims1 10 58323466 to 58424691 101225 + protein coding gene LIM and senescent cell antigen-like domains 1
Ltgq1 10 58401504 to 58401504 0 QTL liver triglyceride QTL 1
Tssr93442 10 58407673 to 58407708 35 + TSS region transcription start site region 93442
Tssr93443 10 58418420 to 58418447 27 + TSS region transcription start site region 93443
Tssr93444 10 58421641 to 58421668 27 + TSS region transcription start site region 93444
Tssr93445 10 58422612 to 58422625 13 + TSS region transcription start site region 93445
Cpgi1563 10 58446454 to 58447547 1093 CpG island CpG island 1563
Tssr3207 10 58446677 to 58446726 49 - TSS region transcription start site region 3207
Tssr93446 10 58446740 to 58446743 3 + TSS region transcription start site region 93446
Tssr93447 10 58446824 to 58446835 11 + TSS region transcription start site region 93447
Tssr93448 10 58446845 to 58446928 83 + TSS region transcription start site region 93448
Ranbp2 10 58446852 to 58494155 47303 + protein coding gene RAN binding protein 2
Tssr97639 10 58447377 to 58447431 54 - TSS region transcription start site region 97639
Tssr93449 10 58476322 to 58476337 15 + TSS region transcription start site region 93449
Tssr93450 10 58478284 to 58478303 19 + TSS region transcription start site region 93450
Tssr93451 10 58480023 to 58480050 27 + TSS region transcription start site region 93451
Tssr93452 10 58484042 to 58484051 9 + TSS region transcription start site region 93452
Tssr93453 10 58485753 to 58485764 11 + TSS region transcription start site region 93453
Tssr93454 10 58485880 to 58485885 5 + TSS region transcription start site region 93454
Tssr93455 10 58485989 to 58486003 14 + TSS region transcription start site region 93455
Tssr93456 10 58493060 to 58493100 40 + TSS region transcription start site region 93456
Tssr93457 10 58493769 to 58493820 51 + TSS region transcription start site region 93457
Cpgi1564 10 58497811 to 58498323 512 CpG island CpG island 1564
Tssr93458 10 58497918 to 58497970 52 + TSS region transcription start site region 93458
Ccdc138 10 58497948 to 58576244 78296 + protein coding gene coiled-coil domain containing 138
Tssr97640 10 58536385 to 58536396 11 - TSS region transcription start site region 97640
Tssr97641 10 58536447 to 58536458 11 - TSS region transcription start site region 97641
C230083P08Rik 10 58545707 to 58548361 2654 unclassified gene RIKEN cDNA C230083P08 gene
Gm18042 10 58555267 to 58556056 789 + pseudogene predicted gene, 18042
Tssr93459 10 58595025 to 58595075 50 + TSS region transcription start site region 93459
D10Lip1 10 58596469 to 58596561 92 DNA segment DNA segment, Chr 10, Lipid Research Laboratory-UCLA 1
Edar 10 58600789 to 58675654 74865 - protein coding gene ectodysplasin-A receptor
Tssr93460 10 58609106 to 58609134 28 + TSS region transcription start site region 93460
Tssr97642 10 58651692 to 58651696 4 - TSS region transcription start site region 97642
Cpgi1565 10 58675507 to 58675886 379 CpG island CpG island 1565
Tssr97643 10 58675631 to 58675654 23 - TSS region transcription start site region 97643
Tssr97644 10 58675689 to 58675713 24 - TSS region transcription start site region 97644
Gm36158 10 58677381 to 58683883 6502 - lncRNA gene predicted gene, 36158
Tssr93461 10 58696725 to 58696754 29 + TSS region transcription start site region 93461
BB019430 10 58696745 to 58704277 7532 + lincRNA gene expressed sequence BB019430
Gm25055 10 58704576 to 58704651 75 - snoRNA gene predicted gene, 25055
Gm17542 10 58713606 to 58718210 4604 - protein coding gene predicted gene, 17542
Gm6494 10 58757370 to 58759471 2101 + pseudogene predicted gene 6494
Cpgi1566 10 58812161 to 58814442 2281 CpG island CpG island 1566
Tssr93462 10 58812337 to 58812352 15 + TSS region transcription start site region 93462
Tssr93463 10 58812359 to 58812409 50 + TSS region transcription start site region 93463
Tssr93464 10 58812475 to 58812495 20 + TSS region transcription start site region 93464
Tssr93465 10 58812566 to 58812600 34 + TSS region transcription start site region 93465
Gm9987 10 58812574 to 58813142 568 - pseudogene predicted gene 9987
Sh3rf3 10 58813359 to 59138916 325557 + protein coding gene SH3 domain containing ring finger 3
Tssr93466 10 58824463 to 58824470 7 + TSS region transcription start site region 93466
Tssr93467 10 58827219 to 58827223 4 + TSS region transcription start site region 93467
D10Mit60 10 58857595 to 58857699 104 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 60
Ath11 10 58857699 to 6201945 -52655754 QTL atherosclerosis 11
Gm27672 10 58965543 to 58965746 203 + miRNA gene predicted gene, 27672
Tssr93468 10 59016366 to 59016369 3 + TSS region transcription start site region 93468
Tssr93469 10 59085765 to 59085769 4 + TSS region transcription start site region 93469
Tssr93470 10 59136868 to 59136893 25 + TSS region transcription start site region 93470
Tssr3208 10 59136977 to 59136989 12 + TSS region transcription start site region 3208
Tssr93471 10 59136997 to 59137013 16 + TSS region transcription start site region 93471
Sept10 10 59141627 to 59221847 80220 - protein coding gene septin 10
Tssr97645 10 59164541 to 59164542 1 - TSS region transcription start site region 97645
Tssr97646 10 59165264 to 59165267 3 - TSS region transcription start site region 97646
Gm23223 10 59195699 to 59195825 126 + snoRNA gene predicted gene, 23223
Cpgi1567 10 59221177 to 59223400 2223 CpG island CpG island 1567
Tssr97647 10 59221469 to 59221518 49 - TSS region transcription start site region 97647
Tssr97648 10 59221726 to 59221744 18 - TSS region transcription start site region 97648
Tssr97649 10 59221757 to 59221803 46 - TSS region transcription start site region 97649
Tssr93472 10 59221878 to 59221929 51 + TSS region transcription start site region 93472
Tssr93473 10 59221945 to 59221960 15 + TSS region transcription start site region 93473
Sowahc 10 59221953 to 59226434 4481 + protein coding gene sosondowah ankyrin repeat domain family member C
Tssr93474 10 59223511 to 59223524 13 + TSS region transcription start site region 93474
Tssr93475 10 59226009 to 59226056 47 + TSS region transcription start site region 93475
Tssr93476 10 59230072 to 59230076 4 + TSS region transcription start site region 93476
Gm36257 10 59243600 to 59256861 13261 + lncRNA gene predicted gene, 36257
Gm40669 10 59253323 to 59261886 8563 - lncRNA gene predicted gene, 40669
Tssr93477 10 59256871 to 59256876 5 + TSS region transcription start site region 93477
Gm40670 10 59267171 to 59277540 10369 + lncRNA gene predicted gene, 40670
Tssr93478 10 59268315 to 59268333 18 + TSS region transcription start site region 93478
Cpgi1568 10 59280267 to 59280741 474 CpG island CpG island 1568
Tssr97650 10 59322226 to 59322231 5 - TSS region transcription start site region 97650
Cpgi1569 10 59322914 to 59324091 1177 CpG island CpG island 1569
P4ha1 10 59323296 to 59373304 50008 + protein coding gene procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide
Tssr93479 10 59323357 to 59323374 17 + TSS region transcription start site region 93479
Tssr93480 10 59346162 to 59346178 16 + TSS region transcription start site region 93480
Tssr93481 10 59346323 to 59346340 17 + TSS region transcription start site region 93481
Tssr93482 10 59369081 to 59369087 6 + TSS region transcription start site region 93482
Gm10273 10 59395632 to 59396757 1125 + pseudogene predicted pseudogene 10273
Tssr93483 10 59403401 to 59403433 32 + TSS region transcription start site region 93483
Tssr93484 10 59403644 to 59403669 25 + TSS region transcription start site region 93484
Pla2g12b 10 59403660 to 59421976 18316 + protein coding gene phospholipase A2, group XIIB
Tssr93485 10 59403676 to 59403687 11 + TSS region transcription start site region 93485
Oit3 10 59422960 to 59441779 18819 - protein coding gene oncoprotein induced transcript 3
Tssr97651 10 59430999 to 59431038 39 - TSS region transcription start site region 97651
Cpgi1570 10 59435853 to 59436120 267 CpG island CpG island 1570
Tssr97652 10 59438910 to 59438913 3 - TSS region transcription start site region 97652
Tssr97653 10 59441708 to 59441713 5 - TSS region transcription start site region 97653
Tssr97654 10 59441748 to 59441782 34 - TSS region transcription start site region 97654
Gm36318 10 59441753 to 59443885 2132 + lncRNA gene predicted gene, 36318
Tssr97655 10 59441784 to 59441800 16 - TSS region transcription start site region 97655
Tssr97656 10 59441801 to 59441808 7 - TSS region transcription start site region 97656
Tssr97657 10 59441838 to 59441839 1 - TSS region transcription start site region 97657
Tssr97658 10 59441840 to 59441851 11 - TSS region transcription start site region 97658
Tssr97659 10 59441869 to 59441880 11 - TSS region transcription start site region 97659
Mcu 10 59446984 to 59616692 169708 - protein coding gene mitochondrial calcium uniporter
Tssr97660 10 59447986 to 59447989 3 - TSS region transcription start site region 97660
Tssr3209 10 59450866 to 59450867 1 - TSS region transcription start site region 3209
Tssr97661 10 59469453 to 59469460 7 - TSS region transcription start site region 97661
Tssr97662 10 59469463 to 59469475 12 - TSS region transcription start site region 97662
Tssr97663 10 59469490 to 59469497 7 - TSS region transcription start site region 97663
Tssr97664 10 59469500 to 59469509 9 - TSS region transcription start site region 97664
Cpgi1571 10 59503778 to 59504015 237 CpG island CpG island 1571
2510042O18Rik 10 59516799 to 59517677 878 unclassified gene RIKEN cDNA 2510042O18 gene