Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:40161455-42991602

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339 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm31992 10 40164110 to 40169759 5649 + lincRNA gene predicted gene, 31992
Gm47598 10 40180657 to 40183692 3035 - lincRNA gene predicted gene, 47598
Gm37786 10 40219583 to 40222807 3224 - unclassified gene predicted gene, 37786
Rpf2 10 40223246 to 40247036 23790 - protein coding gene ribosome production factor 2 homolog
Tssr97376 10 40227816 to 40227824 8 - TSS region transcription start site region 97376
Tssr97377 10 40227835 to 40227848 13 - TSS region transcription start site region 97377
Tssr97378 10 40233370 to 40233383 13 - TSS region transcription start site region 97378
Tssr97379 10 40234893 to 40234896 3 - TSS region transcription start site region 97379
Cpgi1454 10 40246625 to 40247273 648 CpG island CpG island 1454
Tssr97380 10 40246991 to 40247045 54 - TSS region transcription start site region 97380
Tssr97381 10 40247117 to 40247135 18 - TSS region transcription start site region 97381
Gtf3c6 10 40247701 to 40257856 10155 - protein coding gene general transcription factor IIIC, polypeptide 6, alpha
Cpgi1455 10 40257388 to 40257950 562 CpG island CpG island 1455
Tssr97382 10 40257648 to 40257687 39 - TSS region transcription start site region 97382
Tssr93011 10 40257708 to 40257735 27 + TSS region transcription start site region 93011
Tssr97383 10 40258082 to 40258092 10 - TSS region transcription start site region 97383
Tssr97384 10 40258112 to 40258132 20 - TSS region transcription start site region 97384
Tssr93012 10 40258463 to 40258470 7 + TSS region transcription start site region 93012
Rnu3a 10 40258576 to 40258679 103 + snRNA gene U3A small nuclear RNA
A930033M14Rik 10 40260934 to 40261333 399 + lincRNA gene RIKEN cDNA A930033M14 gene
Gm47867 10 40280683 to 40282053 1370 - pseudogene predicted gene, 47867
Tssr93013 10 40284019 to 40284024 5 + TSS region transcription start site region 93013
Amd1 10 40287458 to 40302186 14728 - protein coding gene S-adenosylmethionine decarboxylase 1
Cpgi1456 10 40300671 to 40301777 1106 CpG island CpG island 1456
Tssr93014 10 40300942 to 40300987 45 + TSS region transcription start site region 93014
Cpgi1457 10 40302160 to 40302882 722 CpG island CpG island 1457
Tssr97385 10 40302186 to 40302206 20 - TSS region transcription start site region 97385
Gm8948 10 40333951 to 40334320 369 + pseudogene predicted gene 8948
Cdk19os 10 40348508 to 40350103 1595 - antisense lncRNA gene cyclin-dependent kinase 19, opposite strand
Tssr97386 10 40348638 to 40348677 39 - TSS region transcription start site region 97386
Cpgi1458 10 40348758 to 40350245 1487 CpG island CpG island 1458
Tssr93015 10 40349265 to 40349387 122 + TSS region transcription start site region 93015
Cdk19 10 40349308 to 40483818 134510 + protein coding gene cyclin-dependent kinase 19
Tssr93016 10 40349474 to 40349518 44 + TSS region transcription start site region 93016
Tssr97387 10 40350002 to 40350009 7 - TSS region transcription start site region 97387
Tssr97388 10 40350027 to 40350101 74 - TSS region transcription start site region 97388
Tssr97389 10 40350111 to 40350120 9 - TSS region transcription start site region 97389
Gm8067 10 40383963 to 40384524 561 - pseudogene predicted gene 8067
Tssr93017 10 40386384 to 40386391 7 + TSS region transcription start site region 93017
Tssr3183 10 40421891 to 40421936 45 + TSS region transcription start site region 3183
Cpgi1459 10 40425465 to 40425620 155 CpG island CpG island 1459
Tssr93018 10 40426802 to 40426814 12 + TSS region transcription start site region 93018
Tssr93019 10 40433889 to 40433900 11 + TSS region transcription start site region 93019
Tssr93020 10 40444833 to 40444858 25 + TSS region transcription start site region 93020
Gm32234 10 40464674 to 40466627 1953 + protein coding gene predicted gene, 32234
Tssr93021 10 40477680 to 40477727 47 + TSS region transcription start site region 93021
Tssr97390 10 40502861 to 40502905 44 - TSS region transcription start site region 97390
Cpgi1460 10 40536937 to 40537389 452 CpG island CpG island 1460
Gm18671 10 40548892 to 40549574 682 + pseudogene predicted gene, 18671
Gm17795 10 40565916 to 40566672 756 - pseudogene predicted gene, 17795
Cpgi1461 10 40570275 to 40570589 314 CpG island CpG island 1461
Tssr93022 10 40570332 to 40570352 20 + TSS region transcription start site region 93022
Slc22a16 10 40570336 to 40604132 33796 + protein coding gene solute carrier family 22 (organic cation transporter), member 16
Tssr93023 10 40570357 to 40570362 5 + TSS region transcription start site region 93023
Tssr93024 10 40570371 to 40570390 19 + TSS region transcription start site region 93024
Tssr93025 10 40570609 to 40570618 9 + TSS region transcription start site region 93025
Tssr93026 10 40629987 to 40630053 66 + TSS region transcription start site region 93026
Ddo 10 40630011 to 40681847 51836 + protein coding gene D-aspartate oxidase
Tssr93027 10 40630057 to 40630063 6 + TSS region transcription start site region 93027
Tssr3184 10 40645320 to 40645322 2 + TSS region transcription start site region 3184
Tssr93028 10 40673069 to 40673110 41 + TSS region transcription start site region 93028
Cpgi1462 10 40682972 to 40683761 789 CpG island CpG island 1462
Tssr93029 10 40683253 to 40683267 14 + TSS region transcription start site region 93029
Mettl24 10 40683282 to 40811083 127801 + protein coding gene methyltransferase like 24
Tssr93030 10 40703678 to 40703696 18 + TSS region transcription start site region 93030
Cpgi1463 10 40810469 to 40810662 193 CpG island CpG island 1463
Cdc40 10 40831621 to 40883143 51522 - protein coding gene cell division cycle 40
Gm22948 10 40875640 to 40875882 242 - unclassified non-coding RNA gene predicted gene, 22948
Cpgi1464 10 40882739 to 40884730 1991 CpG island CpG island 1464
Tssr97391 10 40883073 to 40883130 57 - TSS region transcription start site region 97391
Tssr93031 10 40883469 to 40883483 14 + TSS region transcription start site region 93031
Tssr93032 10 40883493 to 40883508 15 + TSS region transcription start site region 93032
Tssr93033 10 40883520 to 40883598 78 + TSS region transcription start site region 93033
Wasf1 10 40883534 to 40938569 55035 + protein coding gene WAS protein family, member 1
Tssr93034 10 40883620 to 40883634 14 + TSS region transcription start site region 93034
Tssr93035 10 40883819 to 40883862 43 + TSS region transcription start site region 93035
Tssr93036 10 40931919 to 40931938 19 + TSS region transcription start site region 93036
Tssr93037 10 40936171 to 40936206 35 + TSS region transcription start site region 93037
Tssr97392 10 40936174 to 40936188 14 - TSS region transcription start site region 97392
Tssr93038 10 40936399 to 40936416 17 + TSS region transcription start site region 93038
Tssr93039 10 40938191 to 40938200 9 + TSS region transcription start site region 93039
Tssr97393 10 40985683 to 40985688 5 - TSS region transcription start site region 97393
Gm48057 10 41035195 to 41037214 2019 + lincRNA gene predicted gene, 48057
Gm19611 10 41046841 to 41049104 2263 - pseudogene predicted gene, 19611
Gpr6 10 41069977 to 41072285 2308 - protein coding gene G protein-coupled receptor 6
Cpgi1465 10 41070572 to 41071930 1358 CpG island CpG island 1465
Cpgi1466 10 41072049 to 41072429 380 CpG island CpG island 1466
Tssr97394 10 41072279 to 41072290 11 - TSS region transcription start site region 97394
Tssr97395 10 41072292 to 41072308 16 - TSS region transcription start site region 97395
Gm32284 10 41082816 to 41097910 15094 + lincRNA gene predicted gene, 32284
Tssr93040 10 41100967 to 41100968 1 + TSS region transcription start site region 93040
Gm32338 10 41102539 to 41135046 32507 - lincRNA gene predicted gene, 32338
Gm32411 10 41135153 to 41138185 3032 - lncRNA gene predicted gene, 32411
Cpgi1467 10 41151566 to 41151758 192 CpG island CpG island 1467
Fig4 10 41188172 to 41303241 115069 - protein coding gene FIG4 phosphoinositide 5-phosphatase
Gm25526 10 41216045 to 41216176 131 + snoRNA gene predicted gene, 25526
Tssr97396 10 41221320 to 41221332 12 - TSS region transcription start site region 97396
Tssr97397 10 41221397 to 41221402 5 - TSS region transcription start site region 97397
Tssr3185 10 41239865 to 41239866 1 + TSS region transcription start site region 3185
Cpgi1468 10 41302742 to 41303333 591 CpG island CpG island 1468
Tssr97398 10 41303095 to 41303140 45 - TSS region transcription start site region 97398
Tssr97399 10 41303171 to 41303250 79 - TSS region transcription start site region 97399
Ak9 10 41303432 to 41433569 130137 + protein coding gene adenylate kinase 9
Tssr93041 10 41303925 to 41303966 41 + TSS region transcription start site region 93041
Tssr93042 10 41303968 to 41303975 7 + TSS region transcription start site region 93042
Tssr93043 10 41343211 to 41343222 11 + TSS region transcription start site region 93043
Gm18305 10 41362837 to 41364964 2127 - pseudogene predicted gene, 18305
Gm18986 10 41378896 to 41380881 1985 - pseudogene predicted gene, 18986
Gm25626 10 41387900 to 41388006 106 + snRNA gene predicted gene, 25626
Gm47473 10 41403547 to 41403831 284 - pseudogene predicted gene, 47473
Gm27783 10 41408173 to 41408277 104 - rRNA gene predicted gene, 27783
Gm46221 10 41440918 to 41444303 3385 + protein coding gene predicted gene, 46221
Tssr97400 10 41450229 to 41450249 20 - TSS region transcription start site region 97400
Cpgi1469 10 41450268 to 41450894 626 CpG island CpG island 1469
Tssr93044 10 41450363 to 41450421 58 + TSS region transcription start site region 93044
Zbtb24 10 41450383 to 41465574 15191 + protein coding gene zinc finger and BTB domain containing 24
Cpgi1470 10 41475925 to 41476692 767 CpG island CpG island 1470
Mical1 10 41476314 to 41487032 10718 + protein coding gene microtubule associated monooxygenase, calponin and LIM domain containing 1
Tssr93045 10 41476326 to 41476392 66 + TSS region transcription start site region 93045
Tssr97401 10 41477202 to 41477234 32 - TSS region transcription start site region 97401
Cpgi1471 10 41477383 to 41477548 165 CpG island CpG island 1471
Tssr97402 10 41477577 to 41477580 3 - TSS region transcription start site region 97402
Smpd2 10 41487172 to 41490371 3199 - protein coding gene sphingomyelin phosphodiesterase 2, neutral
Tssr97403 10 41488886 to 41488917 31 - TSS region transcription start site region 97403
Cpgi1472 10 41489612 to 41490851 1239 CpG island CpG island 1472
Tssr3186 10 41490107 to 41490151 44 - TSS region transcription start site region 3186
Tssr97404 10 41490328 to 41490331 3 - TSS region transcription start site region 97404
Tssr97405 10 41490335 to 41490368 33 - TSS region transcription start site region 97405
Tssr97406 10 41490369 to 41490380 11 - TSS region transcription start site region 97406
Tssr93046 10 41490436 to 41490483 47 + TSS region transcription start site region 93046
Ppil6 10 41490439 to 41514286 23847 + protein coding gene peptidylprolyl isomerase (cyclophilin)-like 6
Tssr93047 10 41501276 to 41501325 49 + TSS region transcription start site region 93047
Cpgi1473 10 41518560 to 41520201 1641 CpG island CpG island 1473
Tssr97407 10 41519077 to 41519103 26 - TSS region transcription start site region 97407
Tssr97408 10 41519109 to 41519120 11 - TSS region transcription start site region 97408
Tssr93048 10 41519436 to 41519447 11 + TSS region transcription start site region 93048
Tssr93049 10 41519455 to 41519480 25 + TSS region transcription start site region 93049
Tssr93050 10 41519493 to 41519516 23 + TSS region transcription start site region 93050
Cd164 10 41519500 to 41531042 11542 + protein coding gene CD164 antigen
Tssr93051 10 41519730 to 41519743 13 + TSS region transcription start site region 93051
Tssr93052 10 41519817 to 41519833 16 + TSS region transcription start site region 93052
Tssr93053 10 41519850 to 41519859 9 + TSS region transcription start site region 93053
Tssr93054 10 41519874 to 41519927 53 + TSS region transcription start site region 93054
Tssr93055 10 41519948 to 41519961 13 + TSS region transcription start site region 93055
Tssr93056 10 41519980 to 41519989 9 + TSS region transcription start site region 93056
Tssr93057 10 41519990 to 41520000 10 + TSS region transcription start site region 93057
Tssr93058 10 41520529 to 41520534 5 + TSS region transcription start site region 93058
Tssr93059 10 41526818 to 41526854 36 + TSS region transcription start site region 93059
Tssr93060 10 41528748 to 41528759 11 + TSS region transcription start site region 93060
Tssr93061 10 41529546 to 41529560 14 + TSS region transcription start site region 93061
Ccdc162 10 41538844 to 41716537 177693 - protein coding gene coiled-coil domain containing 162
Gm17196 10 41553762 to 41556552 2790 + antisense lncRNA gene predicted gene 17196
5730435O14Rik 10 41568016 to 41576476 8460 + lncRNA gene RIKEN cDNA 5730435O14 gene
D10Mit109 10 41576455 to 41576602 147 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 109
Tssr97409 10 41606450 to 41606456 6 - TSS region transcription start site region 97409
Tssr97410 10 41633864 to 41633875 11 - TSS region transcription start site region 97410
Tssr97411 10 41634142 to 41634151 9 - TSS region transcription start site region 97411
Mir3473b 10 41670739 to 41670793 54 + miRNA gene microRNA 3473b
Cpgi1474 10 41684556 to 41684781 225 CpG island CpG island 1474
Gm47099 10 41685771 to 41686056 285 - pseudogene predicted gene, 47099
Tssr93062 10 41685914 to 41685963 49 + TSS region transcription start site region 93062
Tssr97412 10 41685938 to 41685952 14 - TSS region transcription start site region 97412
Tssr97413 10 41685970 to 41685981 11 - TSS region transcription start site region 97413
Tssr97414 10 41685985 to 41686002 17 - TSS region transcription start site region 97414
Tssr97415 10 41716433 to 41716463 30 - TSS region transcription start site region 97415
Cep57l1 10 41718840 to 41809868 91028 - protein coding gene centrosomal protein 57-like 1
Tssr97416 10 41746382 to 41746403 21 - TSS region transcription start site region 97416
Tssr97417 10 41746633 to 41746650 17 - TSS region transcription start site region 97417
Tssr93063 10 41746749 to 41746758 9 + TSS region transcription start site region 93063
Tssr97418 10 41752211 to 41752267 56 - TSS region transcription start site region 97418
Tssr97419 10 41754914 to 41754922 8 - TSS region transcription start site region 97419
BC048559 10 41774580 to 41780734 6154 + antisense lncRNA gene cDNA sequence BC048559
Gm46222 10 41797597 to 41805332 7735 - pseudogene predicted gene, 46222
Cpgi1475 10 41809470 to 41811087 1617 CpG island CpG island 1475
Tssr97420 10 41809620 to 41809654 34 - TSS region transcription start site region 97420
Tssr97421 10 41809880 to 41809915 35 - TSS region transcription start site region 97421
Tssr93064 10 41809948 to 41809963 15 + TSS region transcription start site region 93064
Tssr93065 10 41809998 to 41810013 15 + TSS region transcription start site region 93065
Tssr93066 10 41810173 to 41810245 72 + TSS region transcription start site region 93066
Tssr93067 10 41810528 to 41810580 52 + TSS region transcription start site region 93067
Sesn1 10 41810574 to 41908436 97862 + protein coding gene sestrin 1
Tssr93068 10 41810844 to 41810861 17 + TSS region transcription start site region 93068
9930024M15Rik 10 41826538 to 41829121 2583 + unclassified gene RIKEN cDNA 9930024M15 gene
9830137J09Rik 10 41874166 to 41876629 2463 unclassified non-coding RNA gene Riken cDNA 9830137J09 gene
Cpgi1476 10 41887081 to 41887866 785 CpG island CpG island 1476
Tssr93069 10 41887428 to 41887455 27 + TSS region transcription start site region 93069
Tssr93070 10 41887457 to 41887498 41 + TSS region transcription start site region 93070
Tssr93071 10 41893947 to 41893959 12 + TSS region transcription start site region 93071
Tssr93072 10 41893967 to 41893978 11 + TSS region transcription start site region 93072
Tssr93073 10 41910887 to 41910890 3 + TSS region transcription start site region 93073
Armc2 10 41914990 to 42018442 103452 - protein coding gene armadillo repeat containing 2
Tssr97422 10 41933759 to 41933770 11 - TSS region transcription start site region 97422
Gm17869 10 41943301 to 41943971 670 - pseudogene predicted gene, 17869
Gm33058 10 41958324 to 41975065 16741 + lncRNA gene predicted gene, 33058
Tssr93074 10 41959126 to 41959130 4 + TSS region transcription start site region 93074
Cpgi1477 10 42017880 to 42018627 747 CpG island CpG island 1477
Tssr93075 10 42018174 to 42018203 29 + TSS region transcription start site region 93075
1700016J18Rik 10 42018216 to 42018810 594 + bidirectional promoter lncRNA gene RIKEN cDNA 1700016J18 gene
Tssr97423 10 42018363 to 42018401 38 - TSS region transcription start site region 97423
D10Mit193 10 42029819 to 42029943 124 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 193