Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:33408256-36388820

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148 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trdn 10 33083483 to 33476709 393226 + protein coding gene triadin
Tssr92919 10 33412027 to 33412041 14 + TSS region transcription start site region 92919
Gm29884 10 33412076 to 33412528 452 + pseudogene predicted gene, 29884
Gm47844 10 33435482 to 33436853 1371 - pseudogene predicted gene, 47844
Tssr3173 10 33461689 to 33461690 1 + TSS region transcription start site region 3173
Gm20304 10 33463905 to 33464348 443 + pseudogene predicted gene, 20304
Gm47908 10 33477115 to 33477472 357 - unclassified gene predicted gene, 47908
Clvs2 10 33512286 to 33624600 112314 - protein coding gene clavesin 2
Gm47910 10 33580688 to 33583829 3141 - unclassified gene predicted gene, 47910
Gm47911 10 33619236 to 33621709 2473 - unclassified gene predicted gene, 47911
Tssr97228 10 33624150 to 33624175 25 - TSS region transcription start site region 97228
Gm15939 10 33624246 to 33662432 38186 + antisense lncRNA gene predicted gene 15939
Cpgi1428 10 33624350 to 33624683 333 CpG island CpG island 1428
Tssr97229 10 33624587 to 33624611 24 - TSS region transcription start site region 97229
D10Mit52 10 33707010 to 33707170 160 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 52
Gm47929 10 33714892 to 33715387 495 + pseudogene predicted gene, 47929
Sult3a2 10 33766424 to 33786704 20280 - protein coding gene sulfotransferase family 3A, member 2
Tssr97230 10 33786715 to 33786737 22 - TSS region transcription start site region 97230
Gm10327 10 33808497 to 33809498 1001 - pseudogene predicted pseudogene 10327
Tssr97231 10 33809571 to 33809573 2 - TSS region transcription start site region 97231
Tssr92920 10 33851000 to 33851004 4 + TSS region transcription start site region 92920
Tssr92921 10 33857710 to 33857713 3 + TSS region transcription start site region 92921
Sult3a1 10 33857721 to 33879532 21811 + protein coding gene sulfotransferase family 3A, member 1
Gm47935 10 33872634 to 33873018 384 - pseudogene predicted gene, 47935
Gm47940 10 33894093 to 33894256 163 - pseudogene predicted gene, 47940
Tssr92922 10 33905015 to 33905047 32 + TSS region transcription start site region 92922
Rsph4a 10 33905111 to 33916021 10910 + protein coding gene radial spoke head 4 homolog A (Chlamydomonas)
Zup1 10 33919142 to 33951269 32127 - protein coding gene zinc finger containing ubiquitin peptidase 1
Tssr97232 10 33924662 to 33924677 15 - TSS region transcription start site region 97232
Tssr97233 10 33927027 to 33927041 14 - TSS region transcription start site region 97233
Tssr97234 10 33933068 to 33933088 20 - TSS region transcription start site region 97234
Tssr97235 10 33933131 to 33933148 17 - TSS region transcription start site region 97235
Tssr97236 10 33933159 to 33933170 11 - TSS region transcription start site region 97236
Tssr97237 10 33933177 to 33933189 12 - TSS region transcription start site region 97237
Tssr97238 10 33933201 to 33933222 21 - TSS region transcription start site region 97238
Tssr97239 10 33933394 to 33933406 12 - TSS region transcription start site region 97239
Tssr97240 10 33936627 to 33936651 24 - TSS region transcription start site region 97240
Tssr97241 10 33937613 to 33937655 42 - TSS region transcription start site region 97241
Tssr97242 10 33939883 to 33939899 16 - TSS region transcription start site region 97242
Tssr97243 10 33947808 to 33947813 5 - TSS region transcription start site region 97243
Tssr97244 10 33949489 to 33949502 13 - TSS region transcription start site region 97244
Cpgi1429 10 33950835 to 33951333 498 CpG island CpG island 1429
Tssr97245 10 33951190 to 33951263 73 - TSS region transcription start site region 97245
Gm48018 10 33969983 to 33976689 6706 + pseudogene predicted gene, 48018
Gm7940 10 33972801 to 33973569 768 - pseudogene predicted gene 7940
Gm48034 10 33980497 to 33980840 343 - pseudogene predicted gene, 48034
A830082N09Rik 10 33987216 to 33995055 7839 - lncRNA gene RIKEN cDNA A830082N09 gene
Rwdd1 10 33996555 to 34019616 23061 - protein coding gene RWD domain containing 1
Gm48045 10 34018815 to 34020762 1947 + antisense lncRNA gene predicted gene, 48045
Cpgi1430 10 34019007 to 34020105 1098 CpG island CpG island 1430
Tssr3174 10 34019390 to 34019401 11 - TSS region transcription start site region 3174
Tssr97246 10 34019469 to 34019478 9 - TSS region transcription start site region 97246
Tssr97247 10 34019497 to 34019559 62 - TSS region transcription start site region 97247
Tssr97248 10 34019561 to 34019626 65 - TSS region transcription start site region 97248
Tssr97249 10 34019628 to 34019638 10 - TSS region transcription start site region 97249
Cpgi1431 10 34033922 to 34034259 337 CpG island CpG island 1431
Trappc3l 10 34037597 to 34109815 72218 + protein coding gene trafficking protein particle complex 3 like
Calhm4 10 34038784 to 34044310 5526 - protein coding gene calcium homeostasis modulator family member 4
Tssr97250 10 34044278 to 34044283 5 - TSS region transcription start site region 97250
Tssr97251 10 34044294 to 34044299 5 - TSS region transcription start site region 97251
Tssr97252 10 34044302 to 34044317 15 - TSS region transcription start site region 97252
D10Mit192 10 34066356 to 34066477 121 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 192
Calhm5 10 34091352 to 34096519 5167 - protein coding gene calcium homeostasis modulator family member 5
Tssr97253 10 34096375 to 34096389 14 - TSS region transcription start site region 97253
Tssr97254 10 34096464 to 34096467 3 - TSS region transcription start site region 97254
Tssr97255 10 34096480 to 34096497 17 - TSS region transcription start site region 97255
Tssr97256 10 34096507 to 34096554 47 - TSS region transcription start site region 97256
Calhm6 10 34126067 to 34127972 1905 - protein coding gene calcium homeostasis modulator family member 6
Cpgi1432 10 34127324 to 34127994 670 CpG island CpG island 1432
Tssr97257 10 34127919 to 34127930 11 - TSS region transcription start site region 97257
Tssr97258 10 34127955 to 34127980 25 - TSS region transcription start site region 97258
Tssr97259 10 34127997 to 34128014 17 - TSS region transcription start site region 97259
Dse 10 34151393 to 34207715 56322 - protein coding gene dermatan sulfate epimerase
Tssr97260 10 34151912 to 34151916 4 - TSS region transcription start site region 97260
D10Mit252 10 34160550 to 34160821 271 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 252
Gm47445 10 34178235 to 34179928 1693 - unclassified gene predicted gene, 47445
Tssr97261 10 34178576 to 34178581 5 - TSS region transcription start site region 97261
Tssr97262 10 34186485 to 34186496 11 - TSS region transcription start site region 97262
Tssr97263 10 34197763 to 34197768 5 - TSS region transcription start site region 97263
Cpgi1433 10 34206556 to 34207547 991 CpG island CpG island 1433
Tssr97264 10 34207177 to 34207200 23 - TSS region transcription start site region 97264
Tssr97265 10 34207201 to 34207265 64 - TSS region transcription start site region 97265
Tssr97266 10 34207423 to 34207480 57 - TSS region transcription start site region 97266
Tssr97267 10 34207486 to 34207511 25 - TSS region transcription start site region 97267
Tssr97268 10 34207574 to 34207589 15 - TSS region transcription start site region 97268
Tssr97269 10 34207827 to 34207849 22 - TSS region transcription start site region 97269
Tssr97270 10 34208251 to 34208276 25 - TSS region transcription start site region 97270
Tssr97271 10 34208294 to 34208321 27 - TSS region transcription start site region 97271
Gm18346 10 34213754 to 34214078 324 - pseudogene predicted gene, 18346
Gm26564 10 34230907 to 34233531 2624 - lincRNA gene predicted gene, 26564
Tssr97272 10 34233559 to 34233573 14 - TSS region transcription start site region 97272
Tssr97273 10 34233593 to 34233596 3 - TSS region transcription start site region 97273
Gm47485 10 34242813 to 34245589 2776 - unclassified gene predicted gene, 47485
Cpgi1434 10 34281894 to 34282927 1033 CpG island CpG island 1434
Tssr92923 10 34282179 to 34282193 14 + TSS region transcription start site region 92923
Tspyl1 10 34282190 to 34284885 2695 + protein coding gene testis-specific protein, Y-encoded-like 1
Tssr92924 10 34282199 to 34282278 79 + TSS region transcription start site region 92924
Tssr92925 10 34283495 to 34283510 15 + TSS region transcription start site region 92925
Tssr92926 10 34283621 to 34283644 23 + TSS region transcription start site region 92926
Tssr92927 10 34283873 to 34283877 4 + TSS region transcription start site region 92927
Tssr92928 10 34284905 to 34284911 6 + TSS region transcription start site region 92928
Gm47508 10 34293558 to 34296573 3015 + unclassified gene predicted gene, 47508
Gm47512 10 34295912 to 34298907 2995 - antisense lncRNA gene predicted gene, 47512
Cpgi1435 10 34297327 to 34298150 823 CpG island CpG island 1435
Tssr92929 10 34297432 to 34297513 81 + TSS region transcription start site region 92929
Tspyl4 10 34297442 to 34301320 3878 + protein coding gene TSPY-like 4
Tssr92930 10 34297562 to 34297577 15 + TSS region transcription start site region 92930
Tssr92931 10 34299064 to 34299068 4 + TSS region transcription start site region 92931
Tssr92932 10 34300841 to 34300858 17 + TSS region transcription start site region 92932
Nt5dc1 10 34303609 to 34418589 114980 - protein coding gene 5'-nucleotidase domain containing 1
Tssr97274 10 34388810 to 34388814 4 - TSS region transcription start site region 97274
Tssr92933 10 34389974 to 34389990 16 + TSS region transcription start site region 92933
Col10a1 10 34389981 to 34397085 7104 + protein coding gene collagen, type X, alpha 1
Cpgi1436 10 34418192 to 34418771 579 CpG island CpG island 1436
Tssr97275 10 34418465 to 34418567 102 - TSS region transcription start site region 97275
Tssr92934 10 34456487 to 34456488 1 + TSS region transcription start site region 92934
Frk 10 34483400 to 34611232 127832 + protein coding gene fyn-related kinase
Tssr92935 10 34483415 to 34483445 30 + TSS region transcription start site region 92935
Tssr92936 10 34483450 to 34483479 29 + TSS region transcription start site region 92936
Tssr92937 10 34483517 to 34483533 16 + TSS region transcription start site region 92937
Tssr92938 10 34483546 to 34483599 53 + TSS region transcription start site region 92938
Tssr92939 10 34483630 to 34483644 14 + TSS region transcription start site region 92939
Tssr92940 10 34484846 to 34484850 4 + TSS region transcription start site region 92940
Gm19162 10 34646912 to 34647634 722 - pseudogene predicted gene, 19162
Tssr3175 10 34673597 to 34673603 6 + TSS region transcription start site region 3175
Tssr97276 10 34713524 to 34713526 2 - TSS region transcription start site region 97276
Tssr92941 10 34787754 to 34787757 3 + TSS region transcription start site region 92941
Gm18252 10 34881457 to 34882160 703 + pseudogene predicted gene, 18252
Tssr97277 10 34882406 to 34882410 4 - TSS region transcription start site region 97277
Tssr92942 10 34898222 to 34898229 7 + TSS region transcription start site region 92942
Gm8834 10 34898256 to 34898820 564 + pseudogene predicted gene 8834
Tssr92943 10 34898697 to 34898710 13 + TSS region transcription start site region 92943
Tssr92944 10 34898777 to 34898784 7 + TSS region transcription start site region 92944
Tssr92945 10 35102619 to 35102620 1 + TSS region transcription start site region 92945
Gm26341 10 35112198 to 35112331 133 + snoRNA gene predicted gene, 26341
Gm47044 10 35142313 to 35142578 265 + pseudogene predicted gene, 47044
Gm18729 10 35242123 to 35242743 620 - pseudogene predicted gene, 18729
1700054O05Rik 10 35478827 to 35485396 6569 - lincRNA gene RIKEN cDNA 1700054O05 gene
Tssr97278 10 35485353 to 35485363 10 - TSS region transcription start site region 97278
Amd2 10 35708691 to 35711891 3200 - protein coding gene S-adenosylmethionine decarboxylase 2
Gm49446 10 35838490 to 35854475 15985 + lincRNA gene predicted gene, 49446
Gm31016 10 35838517 to 35846401 7884 + lncRNA gene predicted gene, 31016
Gm40623 10 35846471 to 35854217 7746 + lncRNA gene predicted gene, 40623
Gm47046 10 35849310 to 35859450 10140 - pseudogene predicted gene, 47046
Tssr3176 10 35911189 to 35911192 3 + TSS region transcription start site region 3176
Chol16 10 36039047 to 36039047 0 QTL cholesterol 16
Gm47048 10 36095876 to 36096495 619 + pseudogene predicted gene, 47048
Tssr92946 10 36148965 to 36148969 4 + TSS region transcription start site region 92946