Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:22457963-23995786

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103 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm40610 10 22450488 to 22460954 10466 - lncRNA gene predicted gene, 40610
D10Mit183a 10 22498128 to 22498275 147 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 183a
D10Mit183b 10 22563199 to 22563337 138 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 183b
D10Dcr6 10 22563212 to 22563300 88 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 6
Gm40612 10 22570800 to 22613510 42710 - lncRNA gene predicted gene, 40612
Gm46216 10 22604904 to 22607998 3094 + lncRNA gene predicted gene, 46216
Cpgi1377 10 22644901 to 22645639 738 CpG island CpG island 1377
Slc2a12 10 22645011 to 22704285 59274 + protein coding gene solute carrier family 2 (facilitated glucose transporter), member 12
Tssr92700 10 22645087 to 22645109 22 + TSS region transcription start site region 92700
Tssr92701 10 22645121 to 22645137 16 + TSS region transcription start site region 92701
Tssr92702 10 22649003 to 22649009 6 + TSS region transcription start site region 92702
Cpgi1378 10 22679424 to 22679679 255 CpG island CpG island 1378
Tbpl1 10 22703879 to 22731938 28059 - protein coding gene TATA box binding protein-like 1
Tssr97039 10 22704283 to 22704284 1 - TSS region transcription start site region 97039
Tssr3162 10 22704647 to 22704648 1 + TSS region transcription start site region 3162
Mir7663 10 22729372 to 22729432 60 - miRNA gene microRNA 7663
Cpgi1379 10 22730374 to 22732249 1875 CpG island CpG island 1379
Tssr97040 10 22731294 to 22731305 11 - TSS region transcription start site region 97040
Tssr97041 10 22731306 to 22731330 24 - TSS region transcription start site region 97041
Tssr97042 10 22731336 to 22731385 49 - TSS region transcription start site region 97042
Tssr92703 10 22731457 to 22731548 91 + TSS region transcription start site region 92703
Tssr97043 10 22731833 to 22731849 16 - TSS region transcription start site region 97043
Tssr97044 10 22731854 to 22731872 18 - TSS region transcription start site region 97044
Tssr97045 10 22731874 to 22731916 42 - TSS region transcription start site region 97045
Tssr97046 10 22731918 to 22731946 28 - TSS region transcription start site region 97046
Tssr97047 10 22731959 to 22731989 30 - TSS region transcription start site region 97047
Tssr3163 10 22732020 to 22732036 16 + TSS region transcription start site region 3163
Gm47634 10 22751897 to 22753337 1440 + unclassified non-coding RNA gene predicted gene, 47634
Gm17794 10 22791319 to 22792273 954 + pseudogene predicted gene, 17794
Tssr92704 10 22814967 to 22814987 20 + TSS region transcription start site region 92704
Gm10824 10 22815749 to 22823330 7581 + antisense lncRNA gene predicted gene 10824
Cpgi1380 10 22816153 to 22816576 423 CpG island CpG island 1380
Tcf21 10 22817263 to 22820128 2865 - protein coding gene transcription factor 21
Tssr92705 10 22817785 to 22817796 11 + TSS region transcription start site region 92705
Cpgi1381 10 22819176 to 22819951 775 CpG island CpG island 1381
Tssr97048 10 22820126 to 22820150 24 - TSS region transcription start site region 97048
Tssr92706 10 22820268 to 22820279 11 + TSS region transcription start site region 92706
Gm46217 10 22852955 to 22857526 4571 + lncRNA gene predicted gene, 46217
Cpgi1382 10 22954245 to 22954413 168 CpG island CpG island 1382
Gm47787 10 22955901 to 22956584 683 - pseudogene predicted gene, 47787
Gm35126 10 22976409 to 22990277 13868 + lncRNA gene predicted gene, 35126
D10Mit308 10 22999543 to 22999680 137 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-308
Gm35179 10 23002747 to 23020410 17663 + lncRNA gene predicted gene, 35179
Eya4 10 23102963 to 23350786 247823 - protein coding gene EYA transcriptional coactivator and phosphatase 4
Gm24655 10 23166865 to 23166971 106 - snRNA gene predicted gene, 24655
Tssr97049 10 23177015 to 23177020 5 - TSS region transcription start site region 97049
Tssr97050 10 23180171 to 23180199 28 - TSS region transcription start site region 97050
Tssr97051 10 23185527 to 23185536 9 - TSS region transcription start site region 97051
Tssr97052 10 23185560 to 23185571 11 - TSS region transcription start site region 97052
Tssr97053 10 23203830 to 23203835 5 - TSS region transcription start site region 97053
Tssr3164 10 23237215 to 23237224 9 - TSS region transcription start site region 3164
Cpgi1383 10 23348384 to 23348781 397 CpG island CpG island 1383
Cpgi1384 10 23349165 to 23350855 1690 CpG island CpG island 1384
Tssr97054 10 23349860 to 23349881 21 - TSS region transcription start site region 97054
Tssr97055 10 23349892 to 23349919 27 - TSS region transcription start site region 97055
Tssr97056 10 23350191 to 23350251 60 - TSS region transcription start site region 97056
Tssr3165 10 23350329 to 23350342 13 - TSS region transcription start site region 3165
Tssr97057 10 23350808 to 23350832 24 - TSS region transcription start site region 97057
Gm47843 10 23573020 to 23609431 36411 - lincRNA gene predicted gene, 47843
4930520K02Rik 10 23611263 to 23622148 10885 - lincRNA gene RIKEN cDNA 4930520K02 gene
Gm35291 10 23698535 to 23711487 12952 - lncRNA gene predicted gene, 35291
n-TWcca1 10 23777083 to 23777154 71 - tRNA gene nuclear encoded tRNA trytophan 1 (anticodon CCA)
Rps12 10 23785183 to 23787209 2026 - protein coding gene ribosomal protein S12
Snora33 10 23785347 to 23785451 104 - snoRNA gene small nucleolar RNA, H/ACA box 33
Snord100 10 23785754 to 23785821 67 - snoRNA gene small nucleolar RNA, C/D box 100
Tssr97058 10 23785816 to 23785821 5 - TSS region transcription start site region 97058
Gm23130 10 23786470 to 23786543 73 - snoRNA gene predicted gene, 23130
Cpgi1385 10 23786615 to 23787870 1255 CpG island CpG island 1385
Tssr97059 10 23787050 to 23787074 24 - TSS region transcription start site region 97059
Tssr97060 10 23787143 to 23787160 17 - TSS region transcription start site region 97060
Tssr97061 10 23787195 to 23787206 11 - TSS region transcription start site region 97061
Tssr97062 10 23787215 to 23787252 37 - TSS region transcription start site region 97062
Tssr92707 10 23787416 to 23787437 21 + TSS region transcription start site region 92707
D13Sfk8 10 23788193 to 23788335 142 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 8
D13Sfk10 10 23792164 to 23792316 152 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 10
Tssr92708 10 23796645 to 23796660 15 + TSS region transcription start site region 92708
Cpgi1386 10 23796787 to 23797461 674 CpG island CpG island 1386
Tssr92709 10 23796946 to 23797051 105 + TSS region transcription start site region 92709
Slc18b1 10 23796986 to 23827968 30982 + protein coding gene solute carrier family 18, subfamily B, member 1
Tssr92710 10 23797052 to 23797070 18 + TSS region transcription start site region 92710
D13Sfk9 10 23822528 to 23822673 145 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 9
Tssr92711 10 23851427 to 23851453 26 + TSS region transcription start site region 92711
Tssr92712 10 23851454 to 23851489 35 + TSS region transcription start site region 92712
Vnn3 10 23851462 to 23869843 18381 + protein coding gene vanin 3
Tssr92713 10 23851495 to 23851507 12 + TSS region transcription start site region 92713
Tssr92714 10 23851522 to 23851533 11 + TSS region transcription start site region 92714
Tssr92715 10 23851537 to 23851548 11 + TSS region transcription start site region 92715
Tssr92716 10 23851557 to 23851580 23 + TSS region transcription start site region 92716
Tssr92717 10 23851749 to 23851774 25 + TSS region transcription start site region 92717
Vnn1 10 23894688 to 23905343 10655 + protein coding gene vanin 1
Tssr92718 10 23894847 to 23894863 16 + TSS region transcription start site region 92718
Cpgi1387 10 23894951 to 23895231 280 CpG island CpG island 1387
Tssr92719 10 23902146 to 23902156 10 + TSS region transcription start site region 92719
Taar1 10 23920406 to 23921404 998 + protein coding gene trace amine-associated receptor 1
Taar2 10 23938572 to 23941583 3011 + protein coding gene trace amine-associated receptor 2
Del(10Taar2-Taar9)2Tboz 10 23938572 to 24109534 170962 chromosomal deletion deletion, Chr 10, Thomas Bozza 2
Del(10Taar2-Taar9)1Tboz 10 23938572 to 24109534 170962 chromosomal deletion deletion, Chr 10, Thomas Bozza 1
Cpgi1388 10 23940772 to 23941019 247 CpG island CpG island 1388
Taar3 10 23949558 to 23950589 1031 + protein coding gene trace amine-associated receptor 3
Taar4 10 23960494 to 23961537 1043 + protein coding gene trace amine-associated receptor 4
Taar5 10 23970706 to 23971719 1013 + protein coding gene trace amine-associated receptor 5
Taar6 10 23984609 to 23985646 1037 - protein coding gene trace amine-associated receptor 6
Taar7a 10 23992405 to 23993481 1076 - protein coding gene trace amine-associated receptor 7A