Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:21838589-22278604

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Platr6 10 21830499 to 21844851 14352 - lincRNA gene pluripotency associated transcript 6
Tssr97009 10 21844623 to 21844640 17 - TSS region transcription start site region 97009
Tssr97010 10 21844854 to 21844868 14 - TSS region transcription start site region 97010
Tssr97011 10 21846500 to 21846507 7 - TSS region transcription start site region 97011
Gm46215 10 21874671 to 21882278 7607 - lncRNA gene predicted gene, 46215
Gm23839 10 21878784 to 21878892 108 - snoRNA gene predicted gene, 23839
Sgk1 10 21882184 to 21999903 117719 + protein coding gene serum/glucocorticoid regulated kinase 1
Cpgi1363 10 21882205 to 21882593 388 CpG island CpG island 1363
Tssr92650 10 21882214 to 21882239 25 + TSS region transcription start site region 92650
Tssr92651 10 21882300 to 21882354 54 + TSS region transcription start site region 92651
Tssr92652 10 21884172 to 21884175 3 + TSS region transcription start site region 92652
Tssr92653 10 21886622 to 21886645 23 + TSS region transcription start site region 92653
Tssr3160 10 21907954 to 21907971 17 - TSS region transcription start site region 3160
Gm18511 10 21948860 to 21949659 799 + pseudogene predicted gene, 18511
Tssr92654 10 21978643 to 21978689 46 + TSS region transcription start site region 92654
Tssr92655 10 21992206 to 21992213 7 + TSS region transcription start site region 92655
Tssr92656 10 21992216 to 21992234 18 + TSS region transcription start site region 92656
Cpgi1364 10 21992860 to 21993326 466 CpG island CpG island 1364
Tssr92657 10 21993536 to 21993554 18 + TSS region transcription start site region 92657
Cpgi1365 10 21993624 to 21994931 1307 CpG island CpG island 1365
Tssr92658 10 21993877 to 21993886 9 + TSS region transcription start site region 92658
Tssr92659 10 21993946 to 21993955 9 + TSS region transcription start site region 92659
Tssr92660 10 21993965 to 21993990 25 + TSS region transcription start site region 92660
Tssr92661 10 21994001 to 21994021 20 + TSS region transcription start site region 92661
Tssr92662 10 21994026 to 21994045 19 + TSS region transcription start site region 92662
Tssr92663 10 21994145 to 21994184 39 + TSS region transcription start site region 92663
Tssr97012 10 21994514 to 21994552 38 - TSS region transcription start site region 97012
Tssr92664 10 21994674 to 21994694 20 + TSS region transcription start site region 92664
Tssr92665 10 21995346 to 21995350 4 + TSS region transcription start site region 92665
Tssr92666 10 21995780 to 21995809 29 + TSS region transcription start site region 92666
Tssr92667 10 21996923 to 21996936 13 + TSS region transcription start site region 92667
Tssr92668 10 21996945 to 21996956 11 + TSS region transcription start site region 92668
Tssr92669 10 21997013 to 21997026 13 + TSS region transcription start site region 92669
Tssr92670 10 21997068 to 21997079 11 + TSS region transcription start site region 92670
Tssr92671 10 21997097 to 21997112 15 + TSS region transcription start site region 92671
Tssr92672 10 21997121 to 21997135 14 + TSS region transcription start site region 92672
Tssr92673 10 21997136 to 21997158 22 + TSS region transcription start site region 92673
Tssr92674 10 21997169 to 21997181 12 + TSS region transcription start site region 92674
Tssr92675 10 21997435 to 21997449 14 + TSS region transcription start site region 92675
Tssr97013 10 22010109 to 22010112 3 - TSS region transcription start site region 97013
Gm8540 10 22040701 to 22048512 7811 - pseudogene predicted gene 8540
Gm7672 10 22046114 to 22046985 871 - pseudogene predicted gene 7672
Tssr97014 10 22048513 to 22048514 1 - TSS region transcription start site region 97014
Tssr97015 10 22048530 to 22048537 7 - TSS region transcription start site region 97015
Gm18637 10 22052153 to 22053691 1538 + pseudogene predicted gene, 18637
Gm34267 10 22054388 to 22058655 4267 - lncRNA gene predicted gene, 34267
Cpgi1366 10 22058338 to 22058951 613 CpG island CpG island 1366
Tssr97016 10 22058589 to 22058604 15 - TSS region transcription start site region 97016
Tssr97017 10 22058607 to 22058639 32 - TSS region transcription start site region 97017
Tssr97018 10 22058648 to 22058659 11 - TSS region transcription start site region 97018
Tssr92676 10 22058866 to 22058881 15 + TSS region transcription start site region 92676
4930444G20Rik 10 22066309 to 22068079 1770 - protein coding gene RIKEN cDNA 4930444G20 gene
Tssr97019 10 22067662 to 22067665 3 - TSS region transcription start site region 97019
Tssr97020 10 22068538 to 22068546 8 - TSS region transcription start site region 97020
Gm2539 10 22077921 to 22103522 25601 + pseudogene predicted gene, 2539
Gm19791 10 22110815 to 22113358 2543 + pseudogene predicted gene, 19791
E030030I06Rik 10 22113050 to 22149270 36220 - protein coding gene RIKEN cDNA E030030I06 gene
Gm7678 10 22124496 to 22125435 939 + pseudogene predicted gene 7678
Cpgi1367 10 22140787 to 22141055 268 CpG island CpG island 1367
Cpgi1368 10 22142331 to 22142983 652 CpG island CpG island 1368
Cpgi1369 10 22148294 to 22150377 2083 CpG island CpG island 1369
Tssr3161 10 22148813 to 22148853 40 - TSS region transcription start site region 3161
Cpgi1370 10 22150699 to 22150949 250 CpG island CpG island 1370
Cpgi1371 10 22151197 to 22151876 679 CpG island CpG island 1371
Gm4895 10 22153280 to 22154416 1136 - pseudogene predicted gene 4895
Cpgi1372 10 22154193 to 22154587 394 CpG island CpG island 1372
Tssr92677 10 22158395 to 22158405 10 + TSS region transcription start site region 92677
Cpgi1373 10 22158399 to 22158651 252 CpG island CpG island 1373
Tssr92678 10 22158469 to 22158481 12 + TSS region transcription start site region 92678
Tssr92679 10 22158521 to 22158537 16 + TSS region transcription start site region 92679
Raet1e 10 22158532 to 22191790 33258 + protein coding gene retinoic acid early transcript 1E
Tssr92680 10 22158566 to 22158584 18 + TSS region transcription start site region 92680
Cpgi1374 10 22159187 to 22159449 262 CpG island CpG island 1374
Gm26740 10 22187013 to 22302835 115822 - antisense lncRNA gene predicted gene, 26740
Gm26581 10 22212653 to 22217241 4588 + lincRNA gene predicted gene, 26581
Gm1972 10 22240517 to 22254501 13984 + pseudogene predicted pseudogene 1972
Hmgb1-ps8 10 22262742 to 22263367 625 - pseudogene high mobility group box 1, pseudogene 8
H60b 10 22272747 to 22289144 16397 + protein coding gene histocompatibility 60b
Cpgi1375 10 22273309 to 22273472 163 CpG island CpG island 1375
Cpgi1376 10 22273997 to 22274651 654 CpG island CpG island 1376