Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:20065506-20557294

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Map3k5 10 19934472 to 20142753 208281 + protein coding gene mitogen-activated protein kinase kinase kinase 5
Tssr92566 10 20104864 to 20104883 19 + TSS region transcription start site region 92566
Tssr92567 10 20141882 to 20141888 6 + TSS region transcription start site region 92567
Cpgi1347 10 20148296 to 20149832 1536 CpG island CpG island 1347
Tssr92568 10 20148457 to 20148478 21 + TSS region transcription start site region 92568
Tssr92569 10 20148677 to 20148688 11 + TSS region transcription start site region 92569
Tssr92570 10 20148693 to 20148705 12 + TSS region transcription start site region 92570
Tssr3154 10 20148888 to 20148901 13 + TSS region transcription start site region 3154
Map7 10 20148920 to 20281590 132670 + protein coding gene microtubule-associated protein 7
Tssr92571 10 20148978 to 20149014 36 + TSS region transcription start site region 92571
Tssr92572 10 20170725 to 20170758 33 + TSS region transcription start site region 92572
Tssr92573 10 20170761 to 20170796 35 + TSS region transcription start site region 92573
1700026H06Rik 10 20170779 to 20172767 1988 lncRNA gene RIKEN cDNA 1700026H06 gene
Tssr92574 10 20170803 to 20170821 18 + TSS region transcription start site region 92574
Tssr92575 10 20170823 to 20170834 11 + TSS region transcription start site region 92575
Tssr96940 10 20170849 to 20170854 5 - TSS region transcription start site region 96940
Cpgi1348 10 20170875 to 20171044 169 CpG island CpG island 1348
Tssr92576 10 20171003 to 20171045 42 + TSS region transcription start site region 92576
Tssr92577 10 20171089 to 20171100 11 + TSS region transcription start site region 92577
Tssr92578 10 20171902 to 20171927 25 + TSS region transcription start site region 92578
Tssr92579 10 20171956 to 20171975 19 + TSS region transcription start site region 92579
Tssr92580 10 20172001 to 20172012 11 + TSS region transcription start site region 92580
Tssr3155 10 20175305 to 20175310 5 - TSS region transcription start site region 3155
Tssr96941 10 20175314 to 20175322 8 - TSS region transcription start site region 96941
Tssr96942 10 20175329 to 20175346 17 - TSS region transcription start site region 96942
Gm46213 10 20179014 to 20188659 9645 + lncRNA gene predicted gene, 46213
Tssr92581 10 20185424 to 20185425 1 + TSS region transcription start site region 92581
4930405J17Rik 10 20199240 to 20201838 2598 - antisense lncRNA gene RIKEN cDNA 4930405J17 gene
Tssr92582 10 20203605 to 20203616 11 + TSS region transcription start site region 92582
Tssr92583 10 20204859 to 20204900 41 + TSS region transcription start site region 92583
Tssr92584 10 20205249 to 20205282 33 + TSS region transcription start site region 92584
Tssr92585 10 20205295 to 20205323 28 + TSS region transcription start site region 92585
Tssr92586 10 20205356 to 20205366 10 + TSS region transcription start site region 92586
Tssr96943 10 20205892 to 20205929 37 - TSS region transcription start site region 96943
Tssr92587 10 20208435 to 20208446 11 + TSS region transcription start site region 92587
Rpl32l 10 20208490 to 20208888 398 + protein coding gene ribosomal protein L32-like
Gm46214 10 20214843 to 20222892 8049 - lncRNA gene predicted gene, 46214
Tssr92588 10 20229762 to 20229764 2 + TSS region transcription start site region 92588
Tssr92589 10 20229779 to 20229802 23 + TSS region transcription start site region 92589
Gm48249 10 20267049 to 20286647 19598 - antisense lncRNA gene predicted gene, 48249
Tssr92590 10 20267219 to 20267229 10 + TSS region transcription start site region 92590
Tssr92591 10 20267244 to 20267266 22 + TSS region transcription start site region 92591
Tssr92592 10 20267268 to 20267310 42 + TSS region transcription start site region 92592
Gm30285 10 20292785 to 20293206 421 + pseudogene predicted gene, 30285
Mir6413 10 20297581 to 20297688 107 - miRNA gene microRNA 6413
4933406P04Rik 10 20310506 to 20312294 1788 - lincRNA gene RIKEN cDNA 4933406P04 gene
Cpgi1349 10 20311828 to 20313327 1499 CpG island CpG island 1349
D10Csu2 10 20311953 to 20312170 217 DNA segment DNA segment, Chr 10, Central Connecticut State University 2
Bclaf1 10 20312078 to 20342644 30566 + protein coding gene BCL2-associated transcription factor 1
Tssr96944 10 20312239 to 20312278 39 - TSS region transcription start site region 96944
Tssr92593 10 20312363 to 20312400 37 + TSS region transcription start site region 92593
Tssr92594 10 20312461 to 20312492 31 + TSS region transcription start site region 92594
Tssr92595 10 20312498 to 20312518 20 + TSS region transcription start site region 92595
Tssr92596 10 20312524 to 20312539 15 + TSS region transcription start site region 92596
Tssr92597 10 20312955 to 20312976 21 + TSS region transcription start site region 92597
Tssr92598 10 20320148 to 20320149 1 + TSS region transcription start site region 92598
Tssr92599 10 20325375 to 20325399 24 + TSS region transcription start site region 92599
D10Csu3 10 20325405 to 20325982 577 DNA segment DNA segment, Chr 10, Central Connecticut State University 3
Tssr92600 10 20326958 to 20326963 5 + TSS region transcription start site region 92600
Tssr92601 10 20332101 to 20332132 31 + TSS region transcription start site region 92601
Tssr92602 10 20332160 to 20332194 34 + TSS region transcription start site region 92602
Tssr92603 10 20339751 to 20339767 16 + TSS region transcription start site region 92603
Tssr92604 10 20341226 to 20341230 4 + TSS region transcription start site region 92604
Cpgi1350 10 20347370 to 20348189 819 CpG island CpG island 1350
Mtfr2 10 20347770 to 20361304 13534 + protein coding gene mitochondrial fission regulator 2
Tssr92605 10 20347788 to 20347859 71 + TSS region transcription start site region 92605
Tssr92606 10 20348357 to 20348385 28 + TSS region transcription start site region 92606
Tssr92607 10 20353242 to 20353248 6 + TSS region transcription start site region 92607
Gm48537 10 20365010 to 20365437 427 - pseudogene predicted gene, 48537
Tssr96945 10 20365497 to 20365499 2 - TSS region transcription start site region 96945
Pde7b 10 20398004 to 20725078 327074 - protein coding gene phosphodiesterase 7B
Cpgi1351 10 20400005 to 20400621 616 CpG island CpG island 1351
Ath20 10 20407439 to 20407588 149 QTL atherosclerosis 20
D10Mit213 10 20407439 to 20407588 149 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 213
Arrd2 10 20407439 to 27014395 6606956 QTL age-related retinal degeneration 2
Mbis2 10 20407439 to 56155127 35747688 QTL Mycobacterium bovis-induced systemic lupus erythematosus 2
D10Dcr1 10 20407440 to 20407586 146 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 1
Cpgi1352 10 20431256 to 20431424 168 CpG island CpG island 1352
Tssr3156 10 20441905 to 20441907 2 + TSS region transcription start site region 3156
D10Dcr2 10 20464495 to 20464590 95 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 2
Tssr96946 10 20505489 to 20505515 26 - TSS region transcription start site region 96946
Tssr96947 10 20505519 to 20505562 43 - TSS region transcription start site region 96947
Tssr96948 10 20505570 to 20505586 16 - TSS region transcription start site region 96948
Tssr96949 10 20505592 to 20505628 36 - TSS region transcription start site region 96949
Tssr92608 10 20505770 to 20505780 10 + TSS region transcription start site region 92608
Gm17229 10 20518634 to 20519777 1143 - pseudogene predicted gene 17229
Tssr92609 10 20534150 to 20534175 25 + TSS region transcription start site region 92609
Tssr96950 10 20540373 to 20540384 11 - TSS region transcription start site region 96950
F730021E23Rik 10 20548028 to 20550255 2227 unclassified gene RIKEN cDNA F730021E23 gene
Tssr96951 10 20548320 to 20548333 13 - TSS region transcription start site region 96951
Tssr96952 10 20548361 to 20548378 17 - TSS region transcription start site region 96952
Tssr96953 10 20553528 to 20553532 4 - TSS region transcription start site region 96953
Tssr96954 10 20554831 to 20554841 10 - TSS region transcription start site region 96954