Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:12908442-13108519

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr96730 10 12915478 to 12915493 15 - TSS region transcription start site region 96730
B230208H11Rik 10 12916648 to 12923090 6442 - lincRNA gene RIKEN cDNA B230208H11 gene
Cpgi1302 10 12922413 to 12923285 872 CpG island CpG island 1302
n-TLtaa3 10 12922571 to 12922653 82 - tRNA gene nuclear encoded tRNA leucine 3 (anticodon TAA)
Tssr96731 10 12923039 to 12923073 34 - TSS region transcription start site region 96731
Tssr96732 10 12923075 to 12923080 5 - TSS region transcription start site region 96732
Tssr96733 10 12923103 to 12923143 40 - TSS region transcription start site region 96733
Tssr96734 10 12929868 to 12929873 5 - TSS region transcription start site region 96734
Stx11 10 12939983 to 12964498 24515 - protein coding gene syntaxin 11
Cpgi1303 10 12941049 to 12941956 907 CpG island CpG island 1303
Tssr92370 10 12956061 to 12956075 14 + TSS region transcription start site region 92370
Tssr92371 10 12963519 to 12963523 4 + TSS region transcription start site region 92371
Tssr96735 10 12963865 to 12963873 8 - TSS region transcription start site region 96735
Cpgi1304 10 12963936 to 12964850 914 CpG island CpG island 1304
Tssr96736 10 12964211 to 12964245 34 - TSS region transcription start site region 96736
Tssr96737 10 12964252 to 12964278 26 - TSS region transcription start site region 96737
Tssr96738 10 12964441 to 12964472 31 - TSS region transcription start site region 96738
Tssr96739 10 12964488 to 12964515 27 - TSS region transcription start site region 96739
Tssr96740 10 12974682 to 12974709 27 - TSS region transcription start site region 96740
Tssr92372 10 12974805 to 12974819 14 + TSS region transcription start site region 92372
Tssr96741 10 12975595 to 12975604 9 - TSS region transcription start site region 96741
Tssr92373 10 12975703 to 12975714 11 + TSS region transcription start site region 92373
Tssr92374 10 12976229 to 12976251 22 + TSS region transcription start site region 92374
Tssr92375 10 12976318 to 12976327 9 + TSS region transcription start site region 92375
Cpgi1305 10 12995599 to 12995863 264 CpG island CpG island 1305
Bmiq9 10 13000000 to 25000000 12000000 QTL body mass index QTL 9
Cpgi1306 10 13008267 to 13009137 870 CpG island CpG island 1306
Tssr92376 10 13008423 to 13008437 14 + TSS region transcription start site region 92376
Tssr92377 10 13008442 to 13008519 77 + TSS region transcription start site region 92377
Sf3b5 10 13008450 to 13009183 733 + protein coding gene splicing factor 3b, subunit 5
Tssr92378 10 13008534 to 13008547 13 + TSS region transcription start site region 92378
Gm47691 10 13043097 to 13051385 8288 - lincRNA gene predicted gene, 47691
Tssr96742 10 13060385 to 13060400 15 - TSS region transcription start site region 96742
Tssr96743 10 13060425 to 13060432 7 - TSS region transcription start site region 96743
Tssr92379 10 13060529 to 13060538 9 + TSS region transcription start site region 92379
Tssr92380 10 13060699 to 13060723 24 + TSS region transcription start site region 92380
Gm40602 10 13060724 to 13084712 23988 + lncRNA gene predicted gene, 40602
Cpgi1307 10 13060733 to 13061341 608 CpG island CpG island 1307
Cpgi1308 10 13090345 to 13091351 1006 CpG island CpG island 1308
Plagl1 10 13090788 to 13131694 40906 + protein coding gene pleiomorphic adenoma gene-like 1
Tssr92381 10 13090825 to 13090843 18 + TSS region transcription start site region 92381
Hymai 10 13090845 to 13095900 5055 + lncRNA gene hydatidiform mole associated and imprinted transcript
Gm27741 10 13091581 to 13091817 236 - unclassified non-coding RNA gene predicted gene, 27741