Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:127170684-127290690

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
B4galnt1 10 127165225 to 127172330 7105 + protein coding gene beta-1,4-N-acetyl-galactosaminyl transferase 1
Cpgi2340 10 127170002 to 127171344 1342 CpG island CpG island 2340
Tssr96164 10 127170945 to 127170948 3 + TSS region transcription start site region 96164
Tssr96165 10 127172032 to 127172046 14 + TSS region transcription start site region 96165
Slc26a10 10 127172313 to 127180726 8413 - protein coding gene solute carrier family 26, member 10
Tssr99727 10 127177000 to 127177030 30 - TSS region transcription start site region 99727
Cpgi2341 10 127177665 to 127179063 1398 CpG island CpG island 2341
Tssr99728 10 127179095 to 127179097 2 - TSS region transcription start site region 99728
Cpgi2342 10 127180152 to 127180559 407 CpG island CpG island 2342
Tssr99729 10 127180579 to 127180583 4 - TSS region transcription start site region 99729
Tssr96166 10 127181808 to 127181837 29 + TSS region transcription start site region 96166
Tssr96167 10 127181844 to 127181855 11 + TSS region transcription start site region 96167
Tssr96168 10 127181912 to 127181922 10 + TSS region transcription start site region 96168
Arhgef25 10 127182525 to 127190083 7558 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 25
Tssr96169 10 127187778 to 127187790 12 + TSS region transcription start site region 96169
Cpgi2343 10 127188207 to 127189624 1417 CpG island CpG island 2343
Tssr99730 10 127188731 to 127188763 32 - TSS region transcription start site region 99730
Tssr99731 10 127188776 to 127188806 30 - TSS region transcription start site region 99731
Tssr99732 10 127188828 to 127188837 9 - TSS region transcription start site region 99732
Cpgi2344 10 127189837 to 127190160 323 CpG island CpG island 2344
Tssr99733 10 127189981 to 127190071 90 - TSS region transcription start site region 99733
Dtx3 10 127190378 to 127195728 5350 - protein coding gene deltex 3, E3 ubiquitin ligase
Tssr99734 10 127191544 to 127191556 12 - TSS region transcription start site region 99734
Tssr99735 10 127193133 to 127193160 27 - TSS region transcription start site region 99735
Cpgi2345 10 127195131 to 127195767 636 CpG island CpG island 2345
Tssr99736 10 127195198 to 127195222 24 - TSS region transcription start site region 99736
Tssr96170 10 127195240 to 127195298 58 + TSS region transcription start site region 96170
F420014N23Rik 10 127195249 to 127202643 7394 + lincRNA gene RIKEN cDNA F420014N23 gene
Tssr99737 10 127195713 to 127195739 26 - TSS region transcription start site region 99737
Pip4k2c 10 127197067 to 127211585 14518 - protein coding gene phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
Cpgi2346 10 127210982 to 127211886 904 CpG island CpG island 2346
Tssr99738 10 127211528 to 127211626 98 - TSS region transcription start site region 99738
Kif5a 10 127225696 to 127263348 37652 - protein coding gene kinesin family member 5A
Tssr99739 10 127230684 to 127230690 6 - TSS region transcription start site region 99739
Tssr99740 10 127230738 to 127230771 33 - TSS region transcription start site region 99740
Tssr96171 10 127242707 to 127242741 34 + TSS region transcription start site region 96171
Tssr99741 10 127242798 to 127242809 11 - TSS region transcription start site region 99741
Tssr99742 10 127243440 to 127243452 12 - TSS region transcription start site region 99742
Tssr99743 10 127243710 to 127243756 46 - TSS region transcription start site region 99743
Tssr99744 10 127247619 to 127247630 11 - TSS region transcription start site region 99744
Cpgi2347 10 127262551 to 127263429 878 CpG island CpG island 2347
Tssr99745 10 127263043 to 127263050 7 - TSS region transcription start site region 99745
Tssr99746 10 127263063 to 127263101 38 - TSS region transcription start site region 99746
Tssr99747 10 127263102 to 127263133 31 - TSS region transcription start site region 99747
Tssr99748 10 127263147 to 127263156 9 - TSS region transcription start site region 99748
Tssr99749 10 127263315 to 127263345 30 - TSS region transcription start site region 99749
Tssr99750 10 127263346 to 127263368 22 - TSS region transcription start site region 99750
Gm40800 10 127264304 to 127265744 1440 + lncRNA gene predicted gene, 40800
Cpgi2348 10 127266136 to 127267032 896 CpG island CpG island 2348
Tssr96172 10 127266256 to 127266292 36 + TSS region transcription start site region 96172
Tssr96173 10 127266297 to 127266306 9 + TSS region transcription start site region 96173
Tssr96174 10 127266324 to 127266442 118 + TSS region transcription start site region 96174
Dctn2 10 127266368 to 127281950 15582 + protein coding gene dynactin 2
Tssr99751 10 127267026 to 127267046 20 - TSS region transcription start site region 99751
Tssr96175 10 127274984 to 127274994 10 + TSS region transcription start site region 96175
Mbd6 10 127281956 to 127289018 7062 - protein coding gene methyl-CpG binding domain protein 6
Tssr99752 10 127282564 to 127282585 21 - TSS region transcription start site region 99752
Tssr99753 10 127286251 to 127286263 12 - TSS region transcription start site region 99753
Tssr99754 10 127286424 to 127286431 7 - TSS region transcription start site region 99754
Tssr96176 10 127288080 to 127288085 5 + TSS region transcription start site region 96176
Cpgi2349 10 127288297 to 127289583 1286 CpG island CpG island 2349
Tssr99755 10 127288415 to 127288430 15 - TSS region transcription start site region 99755
Tssr99756 10 127288433 to 127288460 27 - TSS region transcription start site region 99756
Tssr96177 10 127288490 to 127288521 31 + TSS region transcription start site region 96177
Gm20492 10 127288514 to 127289681 1167 + lncRNA gene predicted gene 20492
Tssr96178 10 127288528 to 127288551 23 + TSS region transcription start site region 96178
Tssr99757 10 127288610 to 127288633 23 - TSS region transcription start site region 99757
Tssr99758 10 127288759 to 127288774 15 - TSS region transcription start site region 99758
Tssr99759 10 127288819 to 127288846 27 - TSS region transcription start site region 99759
Tssr99760 10 127288851 to 127288918 67 - TSS region transcription start site region 99760
Tssr3392 10 127288910 to 127288951 41 + TSS region transcription start site region 3392
Tssr99761 10 127288965 to 127288997 32 - TSS region transcription start site region 99761
Tssr99762 10 127288999 to 127289035 36 - TSS region transcription start site region 99762
Tssr99763 10 127289056 to 127289067 11 - TSS region transcription start site region 99763
Gm4189 10 127289696 to 127290788 1092 - unclassified non-coding RNA gene predicted gene 4189
Tssr96179 10 127290003 to 127290014 11 + TSS region transcription start site region 96179
Cpgi2350 10 127290325 to 127291223 898 CpG island CpG island 2350
Tssr99764 10 127290338 to 127290360 22 - TSS region transcription start site region 99764