Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:9798679-10018686

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi27 1 9797682 to 9798751 1069 CpG island CpG island 27
Sgk3 1 9798107 to 9900845 102738 + protein coding gene serum/glucocorticoid regulated kinase 3
Tssr10943 1 9798985 to 9798996 11 - TSS region transcription start site region 10943
Tssr5915 1 9799172 to 9799220 48 + TSS region transcription start site region 5915
Tssr10944 1 9799351 to 9799373 22 - TSS region transcription start site region 10944
Gm6195 1 9802197 to 9802553 356 - pseudogene predicted pseudogene 6195
Tssr5916 1 9807006 to 9807014 8 + TSS region transcription start site region 5916
Gm22607 1 9834498 to 9834602 104 - snRNA gene predicted gene, 22607
Tssr5917 1 9836048 to 9836052 4 + TSS region transcription start site region 5917
Cpgi28 1 9848038 to 9848775 737 CpG island CpG island 28
Tssr5918 1 9848270 to 9848285 15 + TSS region transcription start site region 5918
Tssr5919 1 9848294 to 9848362 68 + TSS region transcription start site region 5919
Tssr5920 1 9848375 to 9848398 23 + TSS region transcription start site region 5920
Gm2352 1 9901944 to 9902558 614 + pseudogene predicted gene 2352
Mcmdc2 1 9908638 to 9942085 33447 + protein coding gene minichromosome maintenance domain containing 2
Tssr5921 1 9908654 to 9908669 15 + TSS region transcription start site region 5921
Tssr5922 1 9908679 to 9908686 7 + TSS region transcription start site region 5922
Tssr5923 1 9932092 to 9932107 15 + TSS region transcription start site region 5923
Snhg6 1 9942025 to 9944118 2093 - lincRNA gene small nucleolar RNA host gene 6
Tssr10945 1 9942155 to 9942167 12 - TSS region transcription start site region 10945
Snord87 1 9942470 to 9942543 73 - snoRNA gene small nucleolar RNA, C/D box 87
Tssr10946 1 9942537 to 9942550 13 - TSS region transcription start site region 10946
Tssr10947 1 9943590 to 9943608 18 - TSS region transcription start site region 10947
Cpgi29 1 9943688 to 9944485 797 CpG island CpG island 29
Tssr10948 1 9944087 to 9944090 3 - TSS region transcription start site region 10948
Tssr10949 1 9944104 to 9944127 23 - TSS region transcription start site region 10949
Tcf24 1 9960163 to 9967932 7769 - protein coding gene transcription factor 24
Cpgi30 1 9966928 to 9968423 1495 CpG island CpG island 30
E330040D14Rik 1 9967314 to 9968687 1373 + unclassified gene RIKEN cDNA E330040D14 gene
Tssr10950 1 9967805 to 9967815 10 - TSS region transcription start site region 10950
Gm15818 1 9982387 to 9992366 9979 + antisense lncRNA gene predicted gene 15818
Tssr10951 1 9991919 to 9991930 11 - TSS region transcription start site region 10951
Tssr10952 1 9991936 to 9991949 13 - TSS region transcription start site region 10952
Tssr10953 1 10009098 to 10009160 62 - TSS region transcription start site region 10953
Ppp1r42 1 10009136 to 9968624 -40512 - protein coding gene protein phosphatase 1, regulatory subunit 42
Tssr10954 1 10009161 to 10009166 5 - TSS region transcription start site region 10954
Gm24674 1 10009814 to 10009917 103 - snRNA gene predicted gene, 24674