Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:9694184-13134248

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206 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mybl1 1 9667415 to 9700209 32794 - protein coding gene myeloblastosis oncogene-like 1
Tssr10926 1 9696863 to 9696874 11 - TSS region transcription start site region 10926
Cpgi25 1 9699664 to 9701102 1438 CpG island CpG island 25
Tssr10927 1 9700317 to 9700329 12 - TSS region transcription start site region 10927
Tssr10928 1 9700343 to 9700386 43 - TSS region transcription start site region 10928
Tssr10929 1 9700393 to 9700412 19 - TSS region transcription start site region 10929
Vcpip1 1 9718622 to 9748382 29760 - protein coding gene valosin containing protein (p97)/p47 complex interacting protein 1
Tssr10930 1 9721364 to 9721398 34 - TSS region transcription start site region 10930
Tssr10931 1 9721404 to 9721416 12 - TSS region transcription start site region 10931
Tssr10932 1 9721455 to 9721503 48 - TSS region transcription start site region 10932
Tssr10933 1 9725930 to 9725934 4 - TSS region transcription start site region 10933
Tssr10934 1 9736594 to 9736597 3 - TSS region transcription start site region 10934
Tssr10935 1 9745571 to 9745598 27 - TSS region transcription start site region 10935
Tssr10936 1 9746493 to 9746513 20 - TSS region transcription start site region 10936
Cpgi26 1 9747453 to 9748748 1295 CpG island CpG island 26
1700034P13Rik 1 9747648 to 9771256 23608 + antisense lncRNA gene RIKEN cDNA 1700034P13 gene
Tssr10937 1 9748227 to 9748243 16 - TSS region transcription start site region 10937
Tssr10938 1 9748247 to 9748272 25 - TSS region transcription start site region 10938
Tssr10939 1 9748277 to 9748320 43 - TSS region transcription start site region 10939
Tssr10940 1 9748330 to 9748353 23 - TSS region transcription start site region 10940
Tssr10941 1 9748355 to 9748367 12 - TSS region transcription start site region 10941
Tssr10942 1 9748376 to 9748451 75 - TSS region transcription start site region 10942
D1Mit296 1 9749730 to 9749873 143 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 296
D1Mit58 1 9757119 to 9757372 253 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 58
D1Mit58.2 1 9757246 to 9757363 117 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 58.2
Tssr5907 1 9759104 to 9759112 8 + TSS region transcription start site region 5907
Gm39590 1 9775558 to 9791319 15761 + lncRNA gene predicted gene, 39590
Tssr5908 1 9783723 to 9783735 12 + TSS region transcription start site region 5908
Tssr5909 1 9788396 to 9788407 11 + TSS region transcription start site region 5909
Tssr5910 1 9788409 to 9788420 11 + TSS region transcription start site region 5910
Cpgi27 1 9797682 to 9798751 1069 CpG island CpG island 27
Tssr5911 1 9797795 to 9797809 14 + TSS region transcription start site region 5911
Tssr5912 1 9797812 to 9797823 11 + TSS region transcription start site region 5912
Tssr5913 1 9797986 to 9798040 54 + TSS region transcription start site region 5913
Sgk3 1 9798107 to 9900845 102738 + protein coding gene serum/glucocorticoid regulated kinase 3
Tssr5914 1 9798123 to 9798216 93 + TSS region transcription start site region 5914
Tssr10943 1 9798985 to 9798996 11 - TSS region transcription start site region 10943
Tssr5915 1 9799172 to 9799220 48 + TSS region transcription start site region 5915
Tssr10944 1 9799351 to 9799373 22 - TSS region transcription start site region 10944
Gm6195 1 9802197 to 9802553 356 - pseudogene predicted pseudogene 6195
Tssr5916 1 9807006 to 9807014 8 + TSS region transcription start site region 5916
Gm22607 1 9834498 to 9834602 104 - snRNA gene predicted gene, 22607
Tssr5917 1 9836048 to 9836052 4 + TSS region transcription start site region 5917
Cpgi28 1 9848038 to 9848775 737 CpG island CpG island 28
Tssr5918 1 9848270 to 9848285 15 + TSS region transcription start site region 5918
Tssr5919 1 9848294 to 9848362 68 + TSS region transcription start site region 5919
Tssr5920 1 9848375 to 9848398 23 + TSS region transcription start site region 5920
Gm2352 1 9901944 to 9902558 614 + pseudogene predicted gene 2352
Mcmdc2 1 9908638 to 9942085 33447 + protein coding gene minichromosome maintenance domain containing 2
Tssr5921 1 9908654 to 9908669 15 + TSS region transcription start site region 5921
Tssr5922 1 9908679 to 9908686 7 + TSS region transcription start site region 5922
Tssr5923 1 9932092 to 9932107 15 + TSS region transcription start site region 5923
Snhg6 1 9942025 to 9944118 2093 - lincRNA gene small nucleolar RNA host gene 6
Tssr10945 1 9942155 to 9942167 12 - TSS region transcription start site region 10945
Snord87 1 9942470 to 9942543 73 - snoRNA gene small nucleolar RNA, C/D box 87
Tssr10946 1 9942537 to 9942550 13 - TSS region transcription start site region 10946
Tssr10947 1 9943590 to 9943608 18 - TSS region transcription start site region 10947
Cpgi29 1 9943688 to 9944485 797 CpG island CpG island 29
Tssr10948 1 9944087 to 9944090 3 - TSS region transcription start site region 10948
Tssr10949 1 9944104 to 9944127 23 - TSS region transcription start site region 10949
Tcf24 1 9960163 to 9967932 7769 - protein coding gene transcription factor 24
Cpgi30 1 9966928 to 9968423 1495 CpG island CpG island 30
E330040D14Rik 1 9967314 to 9968687 1373 + unclassified gene RIKEN cDNA E330040D14 gene
Tssr10950 1 9967805 to 9967815 10 - TSS region transcription start site region 10950
Gm15818 1 9982387 to 9992366 9979 + antisense lncRNA gene predicted gene 15818
Tssr10951 1 9991919 to 9991930 11 - TSS region transcription start site region 10951
Tssr10952 1 9991936 to 9991949 13 - TSS region transcription start site region 10952
Tssr10953 1 10009098 to 10009160 62 - TSS region transcription start site region 10953
Ppp1r42 1 10009136 to 9968624 -40512 - protein coding gene protein phosphatase 1, regulatory subunit 42
Tssr10954 1 10009161 to 10009166 5 - TSS region transcription start site region 10954
Gm24674 1 10009814 to 10009917 103 - snRNA gene predicted gene, 24674
Cops5 1 10024600 to 10038159 13559 - protein coding gene COP9 signalosome subunit 5
Cpgi31 1 10037555 to 10038443 888 CpG island CpG island 31
Tssr10955 1 10037883 to 10037894 11 - TSS region transcription start site region 10955
Tssr10956 1 10037922 to 10037931 9 - TSS region transcription start site region 10956
Tssr10957 1 10037932 to 10037968 36 - TSS region transcription start site region 10957
Tssr10958 1 10038106 to 10038169 63 - TSS region transcription start site region 10958
Cspp1 1 10038118 to 10136771 98653 + protein coding gene centrosome and spindle pole associated protein 1
Tssr4 1 10038208 to 10038228 20 + TSS region transcription start site region 4
Cpgi32 1 10039521 to 10040326 805 CpG island CpG island 32
Tssr5924 1 10039762 to 10039792 30 + TSS region transcription start site region 5924
Tssr5925 1 10039797 to 10039819 22 + TSS region transcription start site region 5925
Tssr5926 1 10039824 to 10039845 21 + TSS region transcription start site region 5926
Tssr10959 1 10040007 to 10040017 10 - TSS region transcription start site region 10959
Tssr5927 1 10056922 to 10056926 4 + TSS region transcription start site region 5927
1700047N06Rik 1 10057025 to 10057944 919 - unclassified gene RIKEN cDNA 1700047N06 gene
Tssr10960 1 10057921 to 10057945 24 - TSS region transcription start site region 10960
Tssr5928 1 10059260 to 10059266 6 + TSS region transcription start site region 5928
Arfgef1 1 10137571 to 10232670 95099 - protein coding gene ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)
Tssr10961 1 10162224 to 10162247 23 - TSS region transcription start site region 10961
Gm26348 1 10166539 to 10166778 239 + unclassified non-coding RNA gene predicted gene, 26348
Tssr10962 1 10180945 to 10180957 12 - TSS region transcription start site region 10962
Gm37569 1 10197081 to 10198802 1721 - unclassified gene predicted gene, 37569
Tssr10963 1 10214245 to 10214258 13 - TSS region transcription start site region 10963
Tssr10964 1 10230771 to 10230775 4 - TSS region transcription start site region 10964
Cpgi33 1 10231986 to 10233512 1526 CpG island CpG island 33
Tssr5 1 10232933 to 10232938 5 - TSS region transcription start site region 5
Tssr10965 1 10232968 to 10233000 32 - TSS region transcription start site region 10965
Tssr10966 1 10233007 to 10233020 13 - TSS region transcription start site region 10966
Tssr10967 1 10233047 to 10233093 46 - TSS region transcription start site region 10967
Tssr6 1 10233047 to 10233056 9 + TSS region transcription start site region 6
Tssr10968 1 10233111 to 10233122 11 - TSS region transcription start site region 10968
Tssr5929 1 10260328 to 10260334 6 + TSS region transcription start site region 5929
Tssr7 1 10261684 to 10261719 35 + TSS region transcription start site region 7
Tssr5930 1 10284900 to 10284926 26 + TSS region transcription start site region 5930
Tssr8 1 10315270 to 10315286 16 + TSS region transcription start site region 8
Cpa6 1 10324720 to 10719945 395225 - protein coding gene carboxypeptidase A6
Tssr9 1 10335550 to 10335554 4 + TSS region transcription start site region 9
D1Mit316 1 10380460 to 10380607 147 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 316
Gm38005 1 10449245 to 10451989 2744 - unclassified gene predicted gene, 38005
Gm15604 1 10554007 to 10554376 369 - pseudogene predicted gene 15604
Gm25253 1 10555554 to 10555660 106 - snRNA gene predicted gene, 25253
Gm15603 1 10695123 to 10695614 491 + pseudogene predicted gene 15603
Tssr10969 1 10719898 to 10719939 41 - TSS region transcription start site region 10969
Gm37133 1 10782456 to 10784377 1921 - unclassified gene predicted gene, 37133
Gm5522 1 10805281 to 10806522 1241 + pseudogene predicted gene 5522
Gm28659 1 10868688 to 10869446 758 + pseudogene predicted gene 28659
Tssr5931 1 10878612 to 10878615 3 + TSS region transcription start site region 5931
Tssr5932 1 10880285 to 10880291 6 + TSS region transcription start site region 5932
Gm22963 1 10921670 to 10921760 90 + snoRNA gene predicted gene, 22963
Cpgi34 1 10993263 to 10994110 847 CpG island CpG island 34
Tssr5933 1 10993307 to 10993331 24 + TSS region transcription start site region 5933
Tssr5934 1 10993365 to 10993375 10 + TSS region transcription start site region 5934
Tssr5935 1 10993452 to 10993478 26 + TSS region transcription start site region 5935
Prex2 1 10993465 to 11303681 310216 + protein coding gene phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
Tssr5936 1 10993482 to 10993620 138 + TSS region transcription start site region 5936
Tssr5937 1 10998699 to 10998707 8 + TSS region transcription start site region 5937
Tssr5938 1 11004523 to 11004525 2 + TSS region transcription start site region 5938
Tssr5939 1 11089657 to 11089669 12 + TSS region transcription start site region 5939
Tssr5940 1 11089738 to 11089753 15 + TSS region transcription start site region 5940
Tssr5941 1 11089757 to 11089763 6 + TSS region transcription start site region 5941
Tssr5942 1 11089768 to 11089774 6 + TSS region transcription start site region 5942
Gm24173 1 11134111 to 11134238 127 - snoRNA gene predicted gene, 24173
Tssr5943 1 11185254 to 11185258 4 + TSS region transcription start site region 5943
Gm28686 1 11223566 to 11224174 608 - pseudogene predicted gene 28686
Tssr5944 1 11299452 to 11299482 30 + TSS region transcription start site region 5944
Cpgi35 1 11329553 to 11329766 213 CpG island CpG island 35
Gm37410 1 11363926 to 11366964 3038 - unclassified gene predicted gene, 37410
Tssr10970 1 11395462 to 11395499 37 - TSS region transcription start site region 10970
Tssr10971 1 11401271 to 11401277 6 - TSS region transcription start site region 10971
Cpgi36 1 11413874 to 11414618 744 CpG island CpG island 36
Tssr5945 1 11414089 to 11414146 57 + TSS region transcription start site region 5945
A830018L16Rik 1 11414105 to 11975901 561796 + protein coding gene RIKEN cDNA A830018L16 gene
Tssr5946 1 11414184 to 11414248 64 + TSS region transcription start site region 5946
Tssr5947 1 11414265 to 11414331 66 + TSS region transcription start site region 5947
Gm38178 1 11416918 to 11419388 2470 + unclassified gene predicted gene, 38178
D1Mit429 1 11499312 to 11499412 100 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 429
D1Mit1 1 11515502 to 11515626 124 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1
Gm29273 1 11608139 to 11608400 261 - pseudogene predicted gene 29273
Gm38069 1 11704207 to 11706350 2143 + unclassified gene predicted gene, 38069
D1Mit294 1 11741307 to 11741452 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 294
Gm30898 1 11979540 to 11991123 11583 + lncRNA gene predicted gene, 30898
Gm30974 1 12029084 to 12061033 31949 - lncRNA gene predicted gene, 30974
Gm7560 1 12120960 to 12121832 872 + pseudogene predicted gene 7560
D1Mit160.1 1 12125630 to 12125765 135 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 160.1
D1Mit160 1 12125786 to 12125924 138 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 160
Gm22633 1 12374936 to 12375042 106 + snRNA gene predicted gene, 22633
Gm39591 1 12423687 to 12432474 8787 - lncRNA gene predicted gene, 39591
Mir6341 1 12425986 to 12426106 120 + miRNA gene microRNA 6341
Gm2383 1 12565577 to 12566383 806 + pseudogene predicted gene 2383
Tssr10 1 12615768 to 12615770 2 + TSS region transcription start site region 10
D1Mit275 1 12633679 to 12633766 87 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 275
Gm6216 1 12655867 to 12656553 686 + pseudogene predicted gene 6216
Gm17644 1 12667563 to 12673090 5527 + lincRNA gene predicted gene, 17644
Gm29663 1 12670324 to 12671176 852 - lincRNA gene predicted gene 29663
Sulf1 1 12692277 to 12861192 168915 + protein coding gene sulfatase 1
Tssr5948 1 12692358 to 12692365 7 + TSS region transcription start site region 5948
Tssr5949 1 12692405 to 12692419 14 + TSS region transcription start site region 5949
Tssr5950 1 12692433 to 12692485 52 + TSS region transcription start site region 5950
Tssr5951 1 12692489 to 12692539 50 + TSS region transcription start site region 5951
Tssr5952 1 12692542 to 12692554 12 + TSS region transcription start site region 5952
Tssr5953 1 12692569 to 12692585 16 + TSS region transcription start site region 5953
Tssr10972 1 12693371 to 12693396 25 - TSS region transcription start site region 10972
Tssr5954 1 12718496 to 12718513 17 + TSS region transcription start site region 5954
Tssr5955 1 12718673 to 12718753 80 + TSS region transcription start site region 5955
Tssr5956 1 12725373 to 12725374 1 + TSS region transcription start site region 5956
Tssr5957 1 12744775 to 12744782 7 + TSS region transcription start site region 5957
Tssr5958 1 12772134 to 12772137 3 + TSS region transcription start site region 5958
Tssr5959 1 12807848 to 12807887 39 + TSS region transcription start site region 5959
Tssr10973 1 12814449 to 12814457 8 - TSS region transcription start site region 10973
Cpgi37 1 12836030 to 12836258 228 CpG island CpG island 37
D1Mit64 1 12846696 to 12846827 131 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 64
Fecq3 1 12846696 to 26478604 13631908 QTL fecundity QTL 3
Slco5a1 1 12866549 to 12992650 126101 - protein coding gene solute carrier organic anion transporter family, member 5A1
Cpgi38 1 12990095 to 12992937 2842 CpG island CpG island 38
Tssr5960 1 12990412 to 12990426 14 + TSS region transcription start site region 5960
Tssr10974 1 12990473 to 12990482 9 - TSS region transcription start site region 10974
Tssr10975 1 12991109 to 12991152 43 - TSS region transcription start site region 10975
Tssr11 1 12992328 to 12992356 28 - TSS region transcription start site region 11
Tssr10976 1 12992650 to 12992666 16 - TSS region transcription start site region 10976
Tssr10977 1 12992730 to 12992747 17 - TSS region transcription start site region 10977
Tssr10978 1 13023269 to 13023319 50 - TSS region transcription start site region 10978
Gm37162 1 13059401 to 13059951 550 - unclassified gene predicted gene, 37162
Gm5250 1 13062025 to 13062345 320 + pseudogene predicted gene 5250
Tssr12 1 13063065 to 13063067 2 + TSS region transcription start site region 12
Gm29283 1 13068838 to 13078662 9824 + lincRNA gene predicted gene 29283
Tssr5961 1 13069893 to 13069901 8 + TSS region transcription start site region 5961
Gm39592 1 13090688 to 13104959 14271 - lncRNA gene predicted gene, 39592
Tssr5962 1 13094903 to 13094906 3 + TSS region transcription start site region 5962
Tssr10979 1 13096060 to 13096082 22 - TSS region transcription start site region 10979