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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:91386518-92216536

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102 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ilkap 1 91373861 to 91398815 24954 - protein coding gene integrin-linked kinase-associated serine/threonine phosphatase 2C
Cpgi575 1 91397963 to 91399154 1191 CpG island CpG island 575
Tssr12940 1 91398713 to 91398724 11 - TSS region transcription start site region 12940
Tssr12941 1 91398726 to 91398765 39 - TSS region transcription start site region 12941
Tssr12942 1 91398768 to 91398837 69 - TSS region transcription start site region 12942
Tssr12943 1 91403282 to 91403286 4 - TSS region transcription start site region 12943
1700020N18Rik 1 91404879 to 91406029 1150 - lincRNA gene RIKEN cDNA 1700020N18 gene
Cpgi576 1 91405855 to 91406191 336 CpG island CpG island 576
Tssr12944 1 91406021 to 91406040 19 - TSS region transcription start site region 12944
Tssr12945 1 91406041 to 91406072 31 - TSS region transcription start site region 12945
Tssr12946 1 91406077 to 91406083 6 - TSS region transcription start site region 12946
Hes6 1 91411482 to 91413877 2395 - protein coding gene hairy and enhancer of split 6
Cpgi577 1 91411982 to 91414561 2579 CpG island CpG island 577
Tssr12947 1 91413163 to 91413234 71 - TSS region transcription start site region 12947
Tssr8083 1 91413382 to 91413413 31 + TSS region transcription start site region 8083
Tssr8084 1 91413423 to 91413439 16 + TSS region transcription start site region 8084
Per2 1 91415982 to 91459324 43342 - protein coding gene period circadian clock 2
Tssr155 1 91437956 to 91437983 27 + TSS region transcription start site region 155
Tssr8085 1 91442877 to 91442905 28 + TSS region transcription start site region 8085
Gm35591 1 91446118 to 91453750 7632 + lncRNA gene predicted gene, 35591
Tssr156 1 91456405 to 91456409 4 - TSS region transcription start site region 156
Tssr12948 1 91456462 to 91456473 11 - TSS region transcription start site region 12948
Tssr12949 1 91456530 to 91456550 20 - TSS region transcription start site region 12949
Tssr8086 1 91456775 to 91456789 14 + TSS region transcription start site region 8086
Tssr8087 1 91456805 to 91456812 7 + TSS region transcription start site region 8087
Tssr12950 1 91458241 to 91458251 10 - TSS region transcription start site region 12950
Tssr12951 1 91458273 to 91458289 16 - TSS region transcription start site region 12951
Tssr8088 1 91458557 to 91458563 6 + TSS region transcription start site region 8088
Cpgi578 1 91458577 to 91459921 1344 CpG island CpG island 578
Tssr12952 1 91459254 to 91459336 82 - TSS region transcription start site region 12952
Tssr157 1 91459471 to 91459489 18 + TSS region transcription start site region 157
Gm28381 1 91469906 to 91470098 192 - pseudogene predicted gene 28381
Tssr8089 1 91483017 to 91483030 13 + TSS region transcription start site region 8089
Gm28382 1 91483024 to 91484774 1750 + lincRNA gene predicted gene 28382
Gm19085 1 91487729 to 91490009 2280 - pseudogene predicted gene, 19085
Cpgi579 1 91494201 to 91495399 1198 CpG island CpG island 579
Tssr8090 1 91494596 to 91494624 28 + TSS region transcription start site region 8090
Tssr8091 1 91494631 to 91494698 67 + TSS region transcription start site region 8091
Traf3ip1 1 91494647 to 91529307 34660 + protein coding gene TRAF3 interacting protein 1
Tssr8092 1 91494706 to 91494721 15 + TSS region transcription start site region 8092
Tssr8093 1 91500802 to 91500859 57 + TSS region transcription start site region 8093
Tssr8094 1 91528032 to 91528036 4 + TSS region transcription start site region 8094
Tssr8095 1 91538733 to 91538772 39 + TSS region transcription start site region 8095
Cpgi580 1 91539765 to 91541414 1649 CpG island CpG island 580
Tssr8096 1 91540006 to 91540009 3 + TSS region transcription start site region 8096
Tssr8097 1 91540011 to 91540020 9 + TSS region transcription start site region 8097
Tssr8098 1 91540025 to 91540051 26 + TSS region transcription start site region 8098
Tssr8099 1 91540054 to 91540057 3 + TSS region transcription start site region 8099
Tssr12953 1 91540375 to 91540393 18 - TSS region transcription start site region 12953
Asb1 1 91540544 to 91559589 19045 + protein coding gene ankyrin repeat and SOCS box-containing 1
Tssr8100 1 91540553 to 91540578 25 + TSS region transcription start site region 8100
Tssr8101 1 91540687 to 91540761 74 + TSS region transcription start site region 8101
Tssr8102 1 91541044 to 91541049 5 + TSS region transcription start site region 8102
Tssr8103 1 91541074 to 91541089 15 + TSS region transcription start site region 8103
Tssr158 1 91611356 to 91611367 11 + TSS region transcription start site region 158
Gm28380 1 91611406 to 91624500 13094 + lincRNA gene predicted gene 28380
Tssr8104 1 91626353 to 91626393 40 + TSS region transcription start site region 8104
Tssr12954 1 91650699 to 91650738 39 - TSS region transcription start site region 12954
Tssr8105 1 91653410 to 91653414 4 + TSS region transcription start site region 8105
Tssr8106 1 91720881 to 91720911 30 + TSS region transcription start site region 8106
Gm29100 1 91798528 to 91802937 4409 - antisense lncRNA gene predicted gene 29100
Cpgi581 1 91800503 to 91802765 2262 CpG island CpG island 581
Tssr8107 1 91801453 to 91801487 34 + TSS region transcription start site region 8107
Twist2 1 91801461 to 91848028 46567 + protein coding gene twist basic helix-loop-helix transcription factor 2
Tssr8108 1 91801491 to 91801508 17 + TSS region transcription start site region 8108
Tssr8109 1 91801518 to 91801536 18 + TSS region transcription start site region 8109
Gm46117 1 91813046 to 91832688 19642 - lncRNA gene predicted gene, 46117
Gm29101 1 91822515 to 91823985 1470 + sense intronic lncRNA gene predicted gene 29101
Gm46242 1 91878722 to 91879666 944 - lncRNA gene predicted gene, 46242
D1Mit84 1 91909897 to 91910147 250 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 84
Gm37600 1 91916260 to 91919551 3291 + unclassified gene predicted gene, 37600
Hdac4 1 91928779 to 92195670 266891 - protein coding gene histone deacetylase 4
Tssr12955 1 91931172 to 91931176 4 - TSS region transcription start site region 12955
Gm37048 1 91975987 to 91981564 5577 + unclassified gene predicted gene, 37048
Tssr12956 1 91978486 to 91978489 3 - TSS region transcription start site region 12956
Tssr12957 1 91984655 to 91984663 8 - TSS region transcription start site region 12957
Tssr8110 1 91984781 to 91984790 9 + TSS region transcription start site region 8110
Gm26720 1 91989051 to 91992628 3577 + lincRNA gene predicted gene, 26720
Tssr12958 1 92006844 to 92006883 39 - TSS region transcription start site region 12958
Gm37036 1 92019592 to 92022097 2505 - unclassified gene predicted gene, 37036
Tssr12959 1 92048521 to 92048528 7 - TSS region transcription start site region 12959
Tssr8111 1 92048709 to 92048720 11 + TSS region transcription start site region 8111
Tssr159 1 92048749 to 92048755 6 + TSS region transcription start site region 159
Tssr12960 1 92048954 to 92049000 46 - TSS region transcription start site region 12960
Tssr12961 1 92049004 to 92049040 36 - TSS region transcription start site region 12961
Tssr160 1 92049085 to 92049093 8 - TSS region transcription start site region 160
Tssr8112 1 92049093 to 92049104 11 + TSS region transcription start site region 8112
Tssr8113 1 92049118 to 92049121 3 + TSS region transcription start site region 8113
Tssr8114 1 92049130 to 92049156 26 + TSS region transcription start site region 8114
Tssr8115 1 92052498 to 92052547 49 + TSS region transcription start site region 8115
Tssr8116 1 92058935 to 92058948 13 + TSS region transcription start site region 8116
Tssr8117 1 92058970 to 92058977 7 + TSS region transcription start site region 8117
Tssr12962 1 92113327 to 92113334 7 - TSS region transcription start site region 12962
Tssr12963 1 92114615 to 92114619 4 - TSS region transcription start site region 12963
Tssr12964 1 92126843 to 92126859 16 - TSS region transcription start site region 12964
Tssr12965 1 92127890 to 92127903 13 - TSS region transcription start site region 12965
Tssr12966 1 92127936 to 92127963 27 - TSS region transcription start site region 12966
D1Mit365 1 92129184 to 92129282 98 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 365
Cpgi582 1 92179328 to 92181252 1924 CpG island CpG island 582
Tssr12967 1 92180187 to 92180263 76 - TSS region transcription start site region 12967
Tssr12968 1 92180271 to 92180324 53 - TSS region transcription start site region 12968
Reb1 1 100485942 to 91540544 -8945398 QTL repetitive behavior 1