Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:89928577-92989921

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390 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gbx2 1 89927962 to 89931176 3214 - protein coding gene gastrulation brain homeobox 2
Cpgi552 1 89928626 to 89929088 462 CpG island CpG island 552
Cpgi553 1 89929888 to 89931942 2054 CpG island CpG island 553
Tssr8013 1 89930211 to 89930249 38 + TSS region transcription start site region 8013
D130058E05Rik 1 89930234 to 89933290 3056 + unclassified non-coding RNA gene RIKEN cDNA D130058E05 gene
Tssr12902 1 89930683 to 89930708 25 - TSS region transcription start site region 12902
Tssr12903 1 89931153 to 89931168 15 - TSS region transcription start site region 12903
Tssr12904 1 89931181 to 89931198 17 - TSS region transcription start site region 12904
Cpgi554 1 89932035 to 89932317 282 CpG island CpG island 554
Cpgi555 1 89933761 to 89933944 183 CpG island CpG island 555
Tssr12905 1 89934494 to 89934520 26 - TSS region transcription start site region 12905
Cpgi556 1 89939648 to 89939895 247 CpG island CpG island 556
Cpgi557 1 89940351 to 89940703 352 CpG island CpG island 557
Cpgi558 1 89941564 to 89942355 791 CpG island CpG island 558
Asb18 1 89952295 to 90014666 62371 - protein coding gene ankyrin repeat and SOCS box-containing 18
Gm41915 1 89962520 to 89966561 4041 - lncRNA gene predicted gene, 41915
Cpgi559 1 89967716 to 89969209 1493 CpG island CpG island 559
Tssr12906 1 89968274 to 89968315 41 - TSS region transcription start site region 12906
Tssr12907 1 89968686 to 89968690 4 - TSS region transcription start site region 12907
Tssr12908 1 89968718 to 89968729 11 - TSS region transcription start site region 12908
Cpgi560 1 89991869 to 89993325 1456 CpG island CpG island 560
Gm34616 1 90004228 to 90007361 3133 + lncRNA gene predicted gene, 34616
Tssr8014 1 90005190 to 90005194 4 + TSS region transcription start site region 8014
Cpgi561 1 90006655 to 90006888 233 CpG island CpG island 561
Tssr12909 1 90014485 to 90014507 22 - TSS region transcription start site region 12909
Tssr12910 1 90014604 to 90014634 30 - TSS region transcription start site region 12910
Iqca 1 90042132 to 90153401 111269 - protein coding gene IQ motif containing with AAA domain
D1Mit488 1 90071749 to 90071872 123 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 488
Tssr12911 1 90153396 to 90153406 10 - TSS region transcription start site region 12911
Tssr12912 1 90153426 to 90153442 16 - TSS region transcription start site region 12912
4930434B07Rik 1 90153628 to 90159462 5834 + lincRNA gene RIKEN cDNA 4930434B07 gene
Cpgi562 1 90203858 to 90204132 274 CpG island CpG island 562
Ackr3 1 90203980 to 90215724 11744 + protein coding gene atypical chemokine receptor 3
Tssr8015 1 90203995 to 90204012 17 + TSS region transcription start site region 8015
Cpgi563 1 90222239 to 90222391 152 CpG island CpG island 563
Gm38277 1 90227160 to 90228526 1366 - unclassified gene predicted gene, 38277
Gm34930 1 90247265 to 90261655 14390 + lncRNA gene predicted gene, 34930
Tssr8016 1 90252721 to 90252726 5 + TSS region transcription start site region 8016
Gm28721 1 90255276 to 90260120 4844 - lincRNA gene predicted gene 28721
2700003A03Rik 1 90270711 to 90290770 20059 + lncRNA gene RIKEN cDNA 2700003A03 gene
Gm28723 1 90280458 to 90283912 3454 + lincRNA gene predicted gene 28723
Gm27648 1 90327312 to 90327418 106 + rRNA gene predicted gene, 27648
Gm34992 1 90337731 to 90451763 114032 + lncRNA gene predicted gene, 34992
Gm28722 1 90453394 to 90454501 1107 - lincRNA gene predicted gene 28722
Tssr8017 1 90519792 to 90519824 32 + TSS region transcription start site region 8017
Gm35048 1 90520496 to 90523297 2801 + lncRNA gene predicted gene, 35048
Gm35141 1 90538995 to 90547781 8786 - lncRNA gene predicted gene, 35141
Gm41917 1 90548009 to 90582787 34778 - lncRNA gene predicted gene, 41917
Tssr8018 1 90564153 to 90564195 42 + TSS region transcription start site region 8018
Gm35192 1 90582883 to 90583292 409 + lncRNA gene predicted gene, 35192
Cpgi564 1 90603117 to 90603854 737 CpG island CpG island 564
Cops8 1 90603425 to 90613341 9916 + protein coding gene COP9 signalosome subunit 8
Tssr8019 1 90603460 to 90603511 51 + TSS region transcription start site region 8019
Gm35242 1 90649078 to 90655018 5940 + lncRNA gene predicted gene, 35242
Gm9991 1 90675161 to 90679793 4632 + lincRNA gene predicted gene 9991
Gm35332 1 90686845 to 90703890 17045 - lncRNA gene predicted gene, 35332
D1Mit10 1 90687970 to 90688108 138 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 10
Hrq3 1 90687970 to 90688108 138 QTL heart rate QTL 3
Mssq1 1 90687970 to 90688108 138 QTL mandible size and shape QTL 1
4931428A05Rik 1 90758609 to 90760488 1879 unclassified gene RIKEN cDNA 4931428A05 gene
Gm41918 1 90758762 to 90764014 5252 - lncRNA gene predicted gene, 41918
Col6a3 1 90766860 to 90843971 77111 - protein coding gene collagen, type VI, alpha 3
Tssr12913 1 90775675 to 90775686 11 - TSS region transcription start site region 12913
Tssr12914 1 90775731 to 90775744 13 - TSS region transcription start site region 12914
Tssr12915 1 90775772 to 90775777 5 - TSS region transcription start site region 12915
Tssr12916 1 90780359 to 90780361 2 - TSS region transcription start site region 12916
Tssr12917 1 90822421 to 90822424 3 - TSS region transcription start site region 12917
Gm36970 1 90837275 to 90839133 1858 - unclassified gene predicted gene, 36970
Tssr12918 1 90843916 to 90843983 67 - TSS region transcription start site region 12918
Tssr12919 1 90843992 to 90844004 12 - TSS region transcription start site region 12919
Tssr8020 1 90857987 to 90858000 13 + TSS region transcription start site region 8020
Tssr8021 1 90858006 to 90858018 12 + TSS region transcription start site region 8021
4930474B08Rik 1 90870583 to 90871419 836 - unclassified gene RIKEN cDNA 4930474B08 gene
Gm35381 1 90887867 to 90909237 21370 - lncRNA gene predicted gene, 35381
Cpgi565 1 90914861 to 90915153 292 CpG island CpG island 565
Tssr8022 1 90915064 to 90915114 50 + TSS region transcription start site region 8022
Mlph 1 90915085 to 90951142 36057 + protein coding gene melanophilin
Tssr8023 1 90915115 to 90915135 20 + TSS region transcription start site region 8023
Cpgi566 1 90928208 to 90928379 171 CpG island CpG island 566
Prlh 1 90953108 to 90954027 919 + protein coding gene prolactin releasing hormone
Rab17 1 90958133 to 90969661 11528 - protein coding gene RAB17, member RAS oncogene family
Tssr12920 1 90969383 to 90969402 19 - TSS region transcription start site region 12920
Tssr12921 1 90969429 to 90969471 42 - TSS region transcription start site region 12921
Tssr12922 1 90969607 to 90969631 24 - TSS region transcription start site region 12922
Gm28199 1 90974459 to 90975260 801 - lincRNA gene predicted gene 28199
Cpgi567 1 90998268 to 90999491 1223 CpG island CpG island 567
Tssr8024 1 90998722 to 90998796 74 + TSS region transcription start site region 8024
Lrrfip1 1 90998737 to 91128944 130207 + protein coding gene leucine rich repeat (in FLII) interacting protein 1
Tssr8025 1 91022722 to 91022727 5 + TSS region transcription start site region 8025
Tssr12923 1 91024071 to 91024088 17 - TSS region transcription start site region 12923
Tssr8026 1 91044420 to 91044437 17 + TSS region transcription start site region 8026
Tssr8027 1 91044450 to 91044462 12 + TSS region transcription start site region 8027
Tssr8028 1 91044465 to 91044480 15 + TSS region transcription start site region 8028
Tssr8029 1 91044486 to 91044498 12 + TSS region transcription start site region 8029
Tssr8030 1 91049526 to 91049536 10 + TSS region transcription start site region 8030
Tssr8031 1 91049683 to 91049705 22 + TSS region transcription start site region 8031
Cpgi568 1 91052510 to 91053728 1218 CpG island CpG island 568
Tssr12924 1 91052816 to 91052828 12 - TSS region transcription start site region 12924
Tssr12925 1 91052834 to 91052846 12 - TSS region transcription start site region 12925
Tssr12926 1 91052854 to 91052872 18 - TSS region transcription start site region 12926
Tssr12927 1 91052887 to 91052898 11 - TSS region transcription start site region 12927
Tssr12928 1 91053037 to 91053048 11 - TSS region transcription start site region 12928
Tssr8032 1 91053174 to 91053192 18 + TSS region transcription start site region 8032
Tssr8033 1 91053422 to 91053520 98 + TSS region transcription start site region 8033
Tssr8034 1 91053522 to 91053532 10 + TSS region transcription start site region 8034
Tssr8035 1 91053545 to 91053550 5 + TSS region transcription start site region 8035
Tssr8036 1 91053551 to 91053562 11 + TSS region transcription start site region 8036
Tssr12929 1 91053846 to 91053850 4 - TSS region transcription start site region 12929
Tssr8037 1 91053973 to 91053992 19 + TSS region transcription start site region 8037
Tssr12930 1 91056492 to 91056508 16 - TSS region transcription start site region 12930
Tssr8038 1 91056589 to 91056597 8 + TSS region transcription start site region 8038
Tssr8039 1 91056622 to 91056636 14 + TSS region transcription start site region 8039
Tssr8040 1 91056647 to 91056668 21 + TSS region transcription start site region 8040
Tssr8041 1 91056673 to 91056696 23 + TSS region transcription start site region 8041
Tssr12931 1 91057710 to 91057734 24 - TSS region transcription start site region 12931
Tssr8042 1 91057888 to 91057898 10 + TSS region transcription start site region 8042
Tssr8043 1 91057933 to 91057943 10 + TSS region transcription start site region 8043
Tssr12932 1 91062515 to 91062527 12 - TSS region transcription start site region 12932
Tssr8044 1 91062738 to 91062751 13 + TSS region transcription start site region 8044
Tssr12933 1 91063239 to 91063256 17 - TSS region transcription start site region 12933
Tssr8045 1 91068547 to 91068574 27 + TSS region transcription start site region 8045
Tssr8046 1 91073700 to 91073705 5 + TSS region transcription start site region 8046
Tssr8047 1 91083483 to 91083487 4 + TSS region transcription start site region 8047
Tssr12934 1 91091626 to 91091635 9 - TSS region transcription start site region 12934
Tssr12935 1 91091639 to 91091657 18 - TSS region transcription start site region 12935
Tssr8048 1 91093524 to 91093536 12 + TSS region transcription start site region 8048
Tssr8049 1 91093561 to 91093568 7 + TSS region transcription start site region 8049
Tssr8050 1 91107307 to 91107318 11 + TSS region transcription start site region 8050
Tssr8051 1 91114794 to 91114806 12 + TSS region transcription start site region 8051
Tssr8052 1 91115293 to 91115310 17 + TSS region transcription start site region 8052
Tssr8053 1 91116662 to 91116687 25 + TSS region transcription start site region 8053
Tssr8054 1 91121734 to 91121747 13 + TSS region transcription start site region 8054
Cpgi569 1 91144846 to 91145170 324 CpG island CpG island 569
Tssr8055 1 91144970 to 91144988 18 + TSS region transcription start site region 8055
Tssr8056 1 91145057 to 91145101 44 + TSS region transcription start site region 8056
Rbm44 1 91145089 to 91170795 25706 + protein coding gene RNA binding motif protein 44
Tssr8057 1 91145104 to 91145115 11 + TSS region transcription start site region 8057
Gm35443 1 91147451 to 91147745 294 + pseudogene predicted gene, 35443
Gm7776 1 91171429 to 91172148 719 - pseudogene predicted gene 7776
Tssr8058 1 91177719 to 91177723 4 + TSS region transcription start site region 8058
Cpgi570 1 91179621 to 91180434 813 CpG island CpG island 570
Ramp1 1 91179822 to 91225196 45374 + protein coding gene receptor (calcitonin) activity modifying protein 1
Tssr8059 1 91180004 to 91180024 20 + TSS region transcription start site region 8059
Tssr8060 1 91180025 to 91180055 30 + TSS region transcription start site region 8060
Tssr8061 1 91180058 to 91180067 9 + TSS region transcription start site region 8061
Tssr12936 1 91183476 to 91183485 9 - TSS region transcription start site region 12936
Tssr8062 1 91214231 to 91214258 27 + TSS region transcription start site region 8062
Tssr8063 1 91214524 to 91214538 14 + TSS region transcription start site region 8063
Tssr8064 1 91214555 to 91214579 24 + TSS region transcription start site region 8064
Tssr12937 1 91216951 to 91216959 8 - TSS region transcription start site region 12937
1810073J14Rik 1 91238183 to 91241353 3170 unclassified gene RIKEN cDNA 1810073J14 gene
Ube2f 1 91249690 to 91286520 36830 + protein coding gene ubiquitin-conjugating enzyme E2F (putative)
Cpgi571 1 91249896 to 91251091 1195 CpG island CpG island 571
Tssr12938 1 91250040 to 91250075 35 - TSS region transcription start site region 12938
Tssr8065 1 91250193 to 91250216 23 + TSS region transcription start site region 8065
Tssr8066 1 91250297 to 91250310 13 + TSS region transcription start site region 8066
Tssr8067 1 91250311 to 91250380 69 + TSS region transcription start site region 8067
Tssr8068 1 91250482 to 91250508 26 + TSS region transcription start site region 8068
Tssr8069 1 91250575 to 91250586 11 + TSS region transcription start site region 8069
Tssr12939 1 91251372 to 91251409 37 - TSS region transcription start site region 12939
Tssr154 1 91296003 to 91296011 8 + TSS region transcription start site region 154
Gm7785 1 91296045 to 91296936 891 + pseudogene predicted gene 7785
Gm26683 1 91297203 to 91304405 7202 - lincRNA gene predicted gene, 26683
Cpgi572 1 91297889 to 91298756 867 CpG island CpG island 572
Tssr8070 1 91298334 to 91298353 19 + TSS region transcription start site region 8070
Scly 1 91298338 to 91321075 22737 + protein coding gene selenocysteine lyase
Tssr8071 1 91298354 to 91298391 37 + TSS region transcription start site region 8071
Gm17090 1 91305092 to 91321101 16009 - antisense lncRNA gene predicted gene 17090
Tssr8072 1 91306171 to 91306174 3 + TSS region transcription start site region 8072
Tssr8073 1 91308618 to 91308627 9 + TSS region transcription start site region 8073
Tssr8074 1 91308633 to 91308642 9 + TSS region transcription start site region 8074
Tssr8075 1 91320218 to 91320232 14 + TSS region transcription start site region 8075
Espnl 1 91322075 to 91348303 26228 + protein coding gene espin-like
Tssr8076 1 91322105 to 91322114 9 + TSS region transcription start site region 8076
Tssr8077 1 91322117 to 91322128 11 + TSS region transcription start site region 8077
Tssr8078 1 91338651 to 91338672 21 + TSS region transcription start site region 8078
Tssr8079 1 91338676 to 91338687 11 + TSS region transcription start site region 8079
Cpgi573 1 91344449 to 91345897 1448 CpG island CpG island 573
Tssr8080 1 91351029 to 91351100 71 + TSS region transcription start site region 8080
Klhl30 1 91351073 to 91362404 11331 + protein coding gene kelch-like 30
Cpgi574 1 91365950 to 91367087 1137 CpG island CpG island 574
Tssr8081 1 91366412 to 91366433 21 + TSS region transcription start site region 8081
Erfe 1 91366430 to 91374217 7787 + protein coding gene erythroferrone
Tssr8082 1 91366445 to 91366468 23 + TSS region transcription start site region 8082
Ilkap 1 91373861 to 91398815 24954 - protein coding gene integrin-linked kinase-associated serine/threonine phosphatase 2C
Cpgi575 1 91397963 to 91399154 1191 CpG island CpG island 575
Tssr12940 1 91398713 to 91398724 11 - TSS region transcription start site region 12940
Tssr12941 1 91398726 to 91398765 39 - TSS region transcription start site region 12941
Tssr12942 1 91398768 to 91398837 69 - TSS region transcription start site region 12942
Tssr12943 1 91403282 to 91403286 4 - TSS region transcription start site region 12943
1700020N18Rik 1 91404879 to 91406029 1150 - lincRNA gene RIKEN cDNA 1700020N18 gene
Cpgi576 1 91405855 to 91406191 336 CpG island CpG island 576
Tssr12944 1 91406021 to 91406040 19 - TSS region transcription start site region 12944
Tssr12945 1 91406041 to 91406072 31 - TSS region transcription start site region 12945
Tssr12946 1 91406077 to 91406083 6 - TSS region transcription start site region 12946
Hes6 1 91411482 to 91413877 2395 - protein coding gene hairy and enhancer of split 6
Cpgi577 1 91411982 to 91414561 2579 CpG island CpG island 577
Tssr12947 1 91413163 to 91413234 71 - TSS region transcription start site region 12947
Tssr8083 1 91413382 to 91413413 31 + TSS region transcription start site region 8083
Tssr8084 1 91413423 to 91413439 16 + TSS region transcription start site region 8084