Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:89133274-90803315

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116 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sh3bp4 1 89070462 to 89155068 84606 + protein coding gene SH3-domain binding protein 4
5730492I20Rik 1 89138523 to 89139912 1389 unclassified non-coding RNA gene RIKEN cDNA 5730492I20 gene
D1Mit487 1 89210658 to 89210794 136 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 487
Tssr7988 1 89235188 to 89235193 5 + TSS region transcription start site region 7988
Gm5259 1 89256182 to 89256981 799 - pseudogene predicted gene 5259
Tssr12898 1 89281297 to 89281302 5 - TSS region transcription start site region 12898
Gm28342 1 89302719 to 89358144 55425 - lincRNA gene predicted gene 28342
Cpgi546 1 89302724 to 89303094 370 CpG island CpG island 546
C030007H22Rik 1 89360342 to 89406133 45791 - lincRNA gene RIKEN cDNA C030007H22 gene
Gm41913 1 89387696 to 89394307 6611 + lncRNA gene predicted gene, 41913
Cpgi547 1 89453926 to 89456223 2297 CpG island CpG island 547
Tssr7989 1 89454769 to 89454885 116 + TSS region transcription start site region 7989
Agap1 1 89454811 to 89895282 440471 + protein coding gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
Tssr7990 1 89454886 to 89454920 34 + TSS region transcription start site region 7990
Tssr7991 1 89454933 to 89454948 15 + TSS region transcription start site region 7991
Tssr7992 1 89455304 to 89455308 4 + TSS region transcription start site region 7992
Tssr7993 1 89463906 to 89463910 4 + TSS region transcription start site region 7993
Tssr7994 1 89482062 to 89482065 3 + TSS region transcription start site region 7994
Gm37297 1 89483438 to 89485821 2383 + unclassified gene predicted gene, 37297
Gm25180 1 89563360 to 89563474 114 + rRNA gene predicted gene, 25180
Tssr12899 1 89563503 to 89563513 10 - TSS region transcription start site region 12899
Tssr12900 1 89563521 to 89563532 11 - TSS region transcription start site region 12900
Gm28499 1 89568765 to 89576602 7837 + sense intronic lncRNA gene predicted gene 28499
Gm41914 1 89577982 to 89580815 2833 - lncRNA gene predicted gene, 41914
Cpgi548 1 89579892 to 89582122 2230 CpG island CpG island 548
Tssr7995 1 89580147 to 89580180 33 + TSS region transcription start site region 7995
Tssr7996 1 89580183 to 89580202 19 + TSS region transcription start site region 7996
Tssr7997 1 89580204 to 89580215 11 + TSS region transcription start site region 7997
Tssr7998 1 89580230 to 89580242 12 + TSS region transcription start site region 7998
Tssr7999 1 89580245 to 89580256 11 + TSS region transcription start site region 7999
Tssr8000 1 89580262 to 89580286 24 + TSS region transcription start site region 8000
Tssr8001 1 89580288 to 89580302 14 + TSS region transcription start site region 8001
Tssr8002 1 89580315 to 89580326 11 + TSS region transcription start site region 8002
Tssr8003 1 89603224 to 89603260 36 + TSS region transcription start site region 8003
Cpgi549 1 89644128 to 89644301 173 CpG island CpG island 549
Tssr8004 1 89659334 to 89659363 29 + TSS region transcription start site region 8004
4933400F21Rik 1 89676507 to 89683892 7385 - lncRNA gene RIKEN cDNA 4933400F21 gene
Tssr12901 1 89683869 to 89683904 35 - TSS region transcription start site region 12901
Gm26037 1 89684802 to 89685112 310 + unclassified non-coding RNA gene predicted gene, 26037
Tssr8005 1 89737697 to 89737702 5 + TSS region transcription start site region 8005
Tssr8006 1 89738206 to 89738230 24 + TSS region transcription start site region 8006
Tssr8007 1 89746996 to 89747004 8 + TSS region transcription start site region 8007
Tssr8008 1 89767727 to 89767746 19 + TSS region transcription start site region 8008
Tssr8009 1 89783463 to 89783468 5 + TSS region transcription start site region 8009
Tssr8010 1 89791264 to 89791268 4 + TSS region transcription start site region 8010
Gm37521 1 89825481 to 89827525 2044 + unclassified gene predicted gene, 37521
Tssr8011 1 89866396 to 89866401 5 + TSS region transcription start site region 8011
Tssr8012 1 89871107 to 89871137 30 + TSS region transcription start site region 8012
Cpgi550 1 89922863 to 89923678 815 CpG island CpG island 550
Cpgi551 1 89926931 to 89927615 684 CpG island CpG island 551
Gbx2 1 89927962 to 89931176 3214 - protein coding gene gastrulation brain homeobox 2
Cpgi552 1 89928626 to 89929088 462 CpG island CpG island 552
Cpgi553 1 89929888 to 89931942 2054 CpG island CpG island 553
Tssr8013 1 89930211 to 89930249 38 + TSS region transcription start site region 8013
D130058E05Rik 1 89930234 to 89933290 3056 + unclassified non-coding RNA gene RIKEN cDNA D130058E05 gene
Tssr12902 1 89930683 to 89930708 25 - TSS region transcription start site region 12902
Tssr12903 1 89931153 to 89931168 15 - TSS region transcription start site region 12903
Tssr12904 1 89931181 to 89931198 17 - TSS region transcription start site region 12904
Cpgi554 1 89932035 to 89932317 282 CpG island CpG island 554
Cpgi555 1 89933761 to 89933944 183 CpG island CpG island 555
Tssr12905 1 89934494 to 89934520 26 - TSS region transcription start site region 12905
Cpgi556 1 89939648 to 89939895 247 CpG island CpG island 556
Cpgi557 1 89940351 to 89940703 352 CpG island CpG island 557
Cpgi558 1 89941564 to 89942355 791 CpG island CpG island 558
Asb18 1 89952295 to 90014666 62371 - protein coding gene ankyrin repeat and SOCS box-containing 18
Gm41915 1 89962520 to 89966561 4041 - lncRNA gene predicted gene, 41915
Cpgi559 1 89967716 to 89969209 1493 CpG island CpG island 559
Tssr12906 1 89968274 to 89968315 41 - TSS region transcription start site region 12906
Tssr12907 1 89968686 to 89968690 4 - TSS region transcription start site region 12907
Tssr12908 1 89968718 to 89968729 11 - TSS region transcription start site region 12908
Cpgi560 1 89991869 to 89993325 1456 CpG island CpG island 560
Gm34616 1 90004228 to 90007361 3133 + lncRNA gene predicted gene, 34616
Tssr8014 1 90005190 to 90005194 4 + TSS region transcription start site region 8014
Cpgi561 1 90006655 to 90006888 233 CpG island CpG island 561
Tssr12909 1 90014485 to 90014507 22 - TSS region transcription start site region 12909
Tssr12910 1 90014604 to 90014634 30 - TSS region transcription start site region 12910
Iqca 1 90042132 to 90153401 111269 - protein coding gene IQ motif containing with AAA domain
D1Mit488 1 90071749 to 90071872 123 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 488
Tssr12911 1 90153396 to 90153406 10 - TSS region transcription start site region 12911
Tssr12912 1 90153426 to 90153442 16 - TSS region transcription start site region 12912
4930434B07Rik 1 90153628 to 90159462 5834 + lincRNA gene RIKEN cDNA 4930434B07 gene
Cpgi562 1 90203858 to 90204132 274 CpG island CpG island 562
Ackr3 1 90203980 to 90215724 11744 + protein coding gene atypical chemokine receptor 3
Tssr8015 1 90203995 to 90204012 17 + TSS region transcription start site region 8015
Cpgi563 1 90222239 to 90222391 152 CpG island CpG island 563
Gm38277 1 90227160 to 90228526 1366 - unclassified gene predicted gene, 38277
Gm34930 1 90247265 to 90261655 14390 + lncRNA gene predicted gene, 34930
Tssr8016 1 90252721 to 90252726 5 + TSS region transcription start site region 8016
Gm28721 1 90255276 to 90260120 4844 - lincRNA gene predicted gene 28721
2700003A03Rik 1 90270711 to 90290770 20059 + lncRNA gene RIKEN cDNA 2700003A03 gene
Gm28723 1 90280458 to 90283912 3454 + lincRNA gene predicted gene 28723
Gm27648 1 90327312 to 90327418 106 + rRNA gene predicted gene, 27648
Gm34992 1 90337731 to 90451763 114032 + lncRNA gene predicted gene, 34992
Gm28722 1 90453394 to 90454501 1107 - lincRNA gene predicted gene 28722
Tssr8017 1 90519792 to 90519824 32 + TSS region transcription start site region 8017
Gm35048 1 90520496 to 90523297 2801 + lncRNA gene predicted gene, 35048
Gm35141 1 90538995 to 90547781 8786 - lncRNA gene predicted gene, 35141
Gm41917 1 90548009 to 90582787 34778 - lncRNA gene predicted gene, 41917
Tssr8018 1 90564153 to 90564195 42 + TSS region transcription start site region 8018
Gm35192 1 90582883 to 90583292 409 + lncRNA gene predicted gene, 35192
Cpgi564 1 90603117 to 90603854 737 CpG island CpG island 564
Cops8 1 90603425 to 90613341 9916 + protein coding gene COP9 signalosome subunit 8
Tssr8019 1 90603460 to 90603511 51 + TSS region transcription start site region 8019
Gm35242 1 90649078 to 90655018 5940 + lncRNA gene predicted gene, 35242
Gm9991 1 90675161 to 90679793 4632 + lincRNA gene predicted gene 9991
Gm35332 1 90686845 to 90703890 17045 - lncRNA gene predicted gene, 35332
D1Mit10 1 90687970 to 90688108 138 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 10
Hrq3 1 90687970 to 90688108 138 QTL heart rate QTL 3
Mssq1 1 90687970 to 90688108 138 QTL mandible size and shape QTL 1
4931428A05Rik 1 90758609 to 90760488 1879 unclassified gene RIKEN cDNA 4931428A05 gene
Gm41918 1 90758762 to 90764014 5252 - lncRNA gene predicted gene, 41918
Col6a3 1 90766860 to 90843971 77111 - protein coding gene collagen, type VI, alpha 3
Tssr12913 1 90775675 to 90775686 11 - TSS region transcription start site region 12913
Tssr12914 1 90775731 to 90775744 13 - TSS region transcription start site region 12914
Tssr12915 1 90775772 to 90775777 5 - TSS region transcription start site region 12915
Tssr12916 1 90780359 to 90780361 2 - TSS region transcription start site region 12916