Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:89106297-89456302

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17 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sh3bp4 1 89070462 to 89155068 84606 + protein coding gene SH3-domain binding protein 4
Tssr7987 1 89120861 to 89120866 5 + TSS region transcription start site region 7987
5730492I20Rik 1 89138523 to 89139912 1389 unclassified non-coding RNA gene RIKEN cDNA 5730492I20 gene
D1Mit487 1 89210658 to 89210794 136 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 487
Tssr7988 1 89235188 to 89235193 5 + TSS region transcription start site region 7988
Gm5259 1 89256182 to 89256981 799 - pseudogene predicted gene 5259
Tssr12898 1 89281297 to 89281302 5 - TSS region transcription start site region 12898
Gm28342 1 89302719 to 89358144 55425 - lincRNA gene predicted gene 28342
Cpgi546 1 89302724 to 89303094 370 CpG island CpG island 546
C030007H22Rik 1 89360342 to 89406133 45791 - lincRNA gene RIKEN cDNA C030007H22 gene
Gm41913 1 89387696 to 89394307 6611 + lncRNA gene predicted gene, 41913
Cpgi547 1 89453926 to 89456223 2297 CpG island CpG island 547
Tssr7989 1 89454769 to 89454885 116 + TSS region transcription start site region 7989
Agap1 1 89454811 to 89895282 440471 + protein coding gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
Tssr7990 1 89454886 to 89454920 34 + TSS region transcription start site region 7990
Tssr7991 1 89454933 to 89454948 15 + TSS region transcription start site region 7991
Tssr7992 1 89455304 to 89455308 4 + TSS region transcription start site region 7992