Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:41989590-42690937

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D1Mit1013 1 42007286 to 42007434 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1013
Gm5267 1 42103289 to 42104333 1044 + pseudogene predicted gene 5267
Gm8176 1 42179290 to 42180388 1098 - pseudogene predicted gene 8176
Gm9915 1 42229726 to 42231108 1382 + lincRNA gene predicted gene 9915
Gm29664 1 42238233 to 42238695 462 - lincRNA gene predicted gene 29664
Tssr6506 1 42259803 to 42259810 7 + TSS region transcription start site region 6506
Gm28175 1 42261855 to 42304412 42557 + lincRNA gene predicted gene 28175
Tssr6507 1 42261923 to 42261969 46 + TSS region transcription start site region 6507
Cpgi200 1 42261956 to 42262166 210 CpG island CpG island 200
Gm28140 1 42324590 to 42355937 31347 - lincRNA gene predicted gene 28140
Gm46088 1 42331816 to 42350940 19124 - lncRNA gene predicted gene, 46088
Gm36678 1 42399266 to 42427644 28378 - lncRNA gene predicted gene, 36678
Cpgi201 1 42416072 to 42416265 193 CpG island CpG island 201
D1Mit233 1 42474152 to 42474288 136 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 233
Cpgi202 1 42491566 to 42492074 508 CpG island CpG island 202
Gm37047 1 42491813 to 42495663 3850 + unclassified gene predicted gene, 37047
Tssr11450 1 42498532 to 42498533 1 - TSS region transcription start site region 11450
Gm46089 1 42560407 to 42573333 12926 - lncRNA gene predicted gene, 46089
Gm36822 1 42573783 to 42582017 8234 - lncRNA gene predicted gene, 36822
Gm30248 1 42598931 to 42641594 42663 - lncRNA gene predicted gene, 30248
D1Mit517 1 42627598 to 42627715 117 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-517
Pantr1 1 42648200 to 42694825 46625 - lincRNA gene POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1
Tssr11451 1 42651324 to 42651328 4 - TSS region transcription start site region 11451
4930420N18Rik 1 42651726 to 42652401 675 + unclassified gene RIKEN cDNA 4930420N18 gene
Tssr11452 1 42654492 to 42654497 5 - TSS region transcription start site region 11452
D1Mit433 1 42659196 to 42659320 124 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 433
Tssr11453 1 42665076 to 42665086 10 - TSS region transcription start site region 11453
Tssr11454 1 42667638 to 42667673 35 - TSS region transcription start site region 11454
Tssr67 1 42672789 to 42672815 26 + TSS region transcription start site region 67
Tssr11455 1 42681432 to 42681435 3 - TSS region transcription start site region 11455
Gm42411 1 42682365 to 42696565 14200 + lncRNA gene predicted gene 42411
Cpgi203 1 42684253 to 42685140 887 CpG island CpG island 203
Cpgi204 1 42686176 to 42687005 829 CpG island CpG island 204