Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:39652437-40064814

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D930019O06Rik 1 39650176 to 39657390 7214 + antisense lncRNA gene RIKEN cDNA D930019O06
Rfx8 1 39665299 to 39720989 55690 - protein coding gene regulatory factor X 8
D1Ertd259e 1 39682951 to 39683200 249 DNA segment DNA segment, Chr 1, ERATO Doi 259, expressed
Cpgi190 1 39720598 to 39721183 585 CpG island CpG island 190
Tssr11409 1 39720960 to 39720975 15 - TSS region transcription start site region 11409
Tssr11410 1 39720989 to 39721015 26 - TSS region transcription start site region 11410
Tssr11411 1 39739057 to 39739060 3 - TSS region transcription start site region 11411
D1Dcr32 1 39764977 to 39765072 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 32
Gm3646 1 39804148 to 39805332 1184 - protein coding gene predicted gene 3646
Tssr11412 1 39805311 to 39805345 34 - TSS region transcription start site region 11412
1700066B17Rik 1 39842428 to 39847330 4902 - lincRNA gene RIKEN cDNA 1700066B17 gene
Tssr11413 1 39847322 to 39847334 12 - TSS region transcription start site region 11413
Gm35600 1 39852437 to 39864814 12377 + lncRNA gene predicted gene, 35600
Tssr6394 1 39852441 to 39852469 28 + TSS region transcription start site region 6394
Cpgi191 1 39900110 to 39902052 1942 CpG island CpG island 191
Tssr6395 1 39900883 to 39900963 80 + TSS region transcription start site region 6395
Map4k4 1 39900913 to 40026310 125397 + protein coding gene mitogen-activated protein kinase kinase kinase kinase 4
Tssr6396 1 39901029 to 39901074 45 + TSS region transcription start site region 6396
Tssr6397 1 39901076 to 39901100 24 + TSS region transcription start site region 6397
Tssr6398 1 39901739 to 39901742 3 + TSS region transcription start site region 6398
Tssr6399 1 39903442 to 39903460 18 + TSS region transcription start site region 6399
Tssr6400 1 39904008 to 39904035 27 + TSS region transcription start site region 6400
Tssr6401 1 39904122 to 39904164 42 + TSS region transcription start site region 6401
Tssr6402 1 39907144 to 39907162 18 + TSS region transcription start site region 6402
Cpgi192 1 39935755 to 39935983 228 CpG island CpG island 192
Cpgi193 1 39936257 to 39936794 537 CpG island CpG island 193
Tssr6403 1 39971366 to 39971367 1 + TSS region transcription start site region 6403
Tssr6404 1 39986624 to 39986633 9 + TSS region transcription start site region 6404
D1Mit212 1 39992995 to 39993140 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 212
Tssr6405 1 40009816 to 40009831 15 + TSS region transcription start site region 6405
Tssr6406 1 40009899 to 40009939 40 + TSS region transcription start site region 6406
Tssr6407 1 40010045 to 40010063 18 + TSS region transcription start site region 6407
Tssr6408 1 40025364 to 40025388 24 + TSS region transcription start site region 6408
Tssr6409 1 40028793 to 40028801 8 + TSS region transcription start site region 6409
4930456G14Rik 1 40049039 to 40050368 1329 - unclassified gene RIKEN cDNA 4930456G14 gene
Tssr6410 1 40059348 to 40059351 3 + TSS region transcription start site region 6410