Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:39552951-39813200

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rnf149 1 39551296 to 39577405 26109 - protein coding gene ring finger protein 149
Tssr11383 1 39553324 to 39553367 43 - TSS region transcription start site region 11383
Tssr6390 1 39555472 to 39555485 13 + TSS region transcription start site region 6390
Tssr11384 1 39555523 to 39555543 20 - TSS region transcription start site region 11384
Tssr11385 1 39555640 to 39555673 33 - TSS region transcription start site region 11385
Tssr11386 1 39555997 to 39556022 25 - TSS region transcription start site region 11386
Tssr11387 1 39557819 to 39557829 10 - TSS region transcription start site region 11387
Tssr11388 1 39558301 to 39558325 24 - TSS region transcription start site region 11388
Tssr11389 1 39558362 to 39558380 18 - TSS region transcription start site region 11389
Tssr11390 1 39558931 to 39558943 12 - TSS region transcription start site region 11390
Tssr11391 1 39558961 to 39558973 12 - TSS region transcription start site region 11391
Tssr11392 1 39564043 to 39564051 8 - TSS region transcription start site region 11392
Tssr11393 1 39567014 to 39567048 34 - TSS region transcription start site region 11393
Tssr11394 1 39567617 to 39567623 6 - TSS region transcription start site region 11394
Tssr11395 1 39570924 to 39570974 50 - TSS region transcription start site region 11395
Tssr11396 1 39571000 to 39571027 27 - TSS region transcription start site region 11396
Tssr11397 1 39571157 to 39571164 7 - TSS region transcription start site region 11397
Gm23722 1 39573746 to 39573875 129 - snoRNA gene predicted gene, 23722
Cpgi188 1 39576396 to 39577839 1443 CpG island CpG island 188
Tssr11398 1 39577288 to 39577312 24 - TSS region transcription start site region 11398
Tssr11399 1 39577317 to 39577331 14 - TSS region transcription start site region 11399
Tssr11400 1 39577340 to 39577427 87 - TSS region transcription start site region 11400
Tssr6391 1 39578891 to 39578909 18 + TSS region transcription start site region 6391
Tssr11401 1 39580893 to 39580904 11 - TSS region transcription start site region 11401
Gm5100 1 39597417 to 39598005 588 - pseudogene predicted gene 5100
Tssr59 1 39608596 to 39608621 25 - TSS region transcription start site region 59
Tssr60 1 39614644 to 39614651 7 + TSS region transcription start site region 60
Tssr11402 1 39615687 to 39615690 3 - TSS region transcription start site region 11402
Creg2 1 39618406 to 39651182 32776 - protein coding gene cellular repressor of E1A-stimulated genes 2
Tssr11403 1 39621197 to 39621209 12 - TSS region transcription start site region 11403
Tssr11404 1 39629450 to 39629456 6 - TSS region transcription start site region 11404
Cpgi189 1 39650128 to 39651410 1282 CpG island CpG island 189
D930019O06Rik 1 39650176 to 39657390 7214 + antisense lncRNA gene RIKEN cDNA D930019O06
Tssr6392 1 39650600 to 39650609 9 + TSS region transcription start site region 6392
Tssr6393 1 39650727 to 39650738 11 + TSS region transcription start site region 6393
Tssr11405 1 39650854 to 39650887 33 - TSS region transcription start site region 11405
Tssr11406 1 39650940 to 39650991 51 - TSS region transcription start site region 11406
Tssr11407 1 39651165 to 39651196 31 - TSS region transcription start site region 11407
Tssr11408 1 39651282 to 39651321 39 - TSS region transcription start site region 11408
Rfx8 1 39665299 to 39720989 55690 - protein coding gene regulatory factor X 8
D1Ertd259e 1 39682951 to 39683200 249 DNA segment DNA segment, Chr 1, ERATO Doi 259, expressed
Cpgi190 1 39720598 to 39721183 585 CpG island CpG island 190
Tssr11409 1 39720960 to 39720975 15 - TSS region transcription start site region 11409
Tssr11410 1 39720989 to 39721015 26 - TSS region transcription start site region 11410
Tssr11411 1 39739057 to 39739060 3 - TSS region transcription start site region 11411
D1Dcr32 1 39764977 to 39765072 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 32
Gm3646 1 39804148 to 39805332 1184 - protein coding gene predicted gene 3646
Tssr11412 1 39805311 to 39805345 34 - TSS region transcription start site region 11412