Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:36301867-36738237

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi138 1 36303316 to 36303602 286 CpG island CpG island 138
Cpgi139 1 36307571 to 36308569 998 CpG island CpG island 139
Tssr6253 1 36307727 to 36307735 8 + TSS region transcription start site region 6253
Arid5a 1 36307733 to 36324029 16296 + protein coding gene AT rich interactive domain 5A (MRF1-like)
Tssr6254 1 36307745 to 36307763 18 + TSS region transcription start site region 6254
Tssr6255 1 36307774 to 36307779 5 + TSS region transcription start site region 6255
Tssr6256 1 36308059 to 36308075 16 + TSS region transcription start site region 6256
Tssr6257 1 36308137 to 36308149 12 + TSS region transcription start site region 6257
Tssr6258 1 36308267 to 36308281 14 + TSS region transcription start site region 6258
Tssr11252 1 36309619 to 36309623 4 - TSS region transcription start site region 11252
Tssr37 1 36325805 to 36325815 10 - TSS region transcription start site region 37
Tssr6259 1 36332692 to 36332699 7 + TSS region transcription start site region 6259
Tssr6260 1 36332702 to 36332709 7 + TSS region transcription start site region 6260
4930403P22Rik 1 36332708 to 36333420 712 + lincRNA gene RIKEN cDNA 4930403P22 gene
Tssr11253 1 36333593 to 36333598 5 - TSS region transcription start site region 11253
Kansl3 1 36335730 to 36369181 33451 - protein coding gene KAT8 regulatory NSL complex subunit 3
Tssr38 1 36340874 to 36340876 2 - TSS region transcription start site region 38
Tssr39 1 36345105 to 36345120 15 - TSS region transcription start site region 39
Mir6898 1 36348682 to 36348758 76 - miRNA gene microRNA 6898
Cpgi140 1 36368514 to 36369602 1088 CpG island CpG island 140
Tssr11254 1 36369094 to 36369107 13 - TSS region transcription start site region 11254
Tssr11255 1 36369121 to 36369159 38 - TSS region transcription start site region 11255
Tssr11256 1 36369173 to 36369186 13 - TSS region transcription start site region 11256
Tssr6261 1 36372187 to 36372192 5 + TSS region transcription start site region 6261
Tssr6262 1 36372198 to 36372208 10 + TSS region transcription start site region 6262
Tssr6263 1 36372210 to 36372220 10 + TSS region transcription start site region 6263
Tssr6264 1 36372231 to 36372241 10 + TSS region transcription start site region 6264
Fer1l5 1 36372291 to 36422110 49819 + protein coding gene fer-1-like 5 (C. elegans)
Tssr6265 1 36384491 to 36384494 3 + TSS region transcription start site region 6265
Cpgi141 1 36408484 to 36408924 440 CpG island CpG island 141
Lman2l 1 36422063 to 36445272 23209 - protein coding gene lectin, mannose-binding 2-like
Cpgi142 1 36444716 to 36445452 736 CpG island CpG island 142
Tssr11257 1 36445231 to 36445242 11 - TSS region transcription start site region 11257
Tssr11258 1 36445248 to 36445264 16 - TSS region transcription start site region 11258
Gm33401 1 36461978 to 36462873 895 + lncRNA gene predicted gene, 33401
Tssr6266 1 36461996 to 36462007 11 + TSS region transcription start site region 6266
Gm33454 1 36464718 to 36471546 6828 - lncRNA gene predicted gene, 33454
Cpgi143 1 36471073 to 36472494 1421 CpG island CpG island 143
Tssr6267 1 36471590 to 36471606 16 + TSS region transcription start site region 6267
Cnnm4 1 36471620 to 36508764 37144 + protein coding gene cyclin M4
Gm37909 1 36473952 to 36476110 2158 + unclassified gene predicted gene, 37909
Tssr6268 1 36490151 to 36490154 3 + TSS region transcription start site region 6268
Tssr6269 1 36492709 to 36492736 27 + TSS region transcription start site region 6269
Gm47280 1 36506562 to 36506702 140 + miRNA gene predicted gene, 47280
Tssr6270 1 36506858 to 36506862 4 + TSS region transcription start site region 6270
Cpgi144 1 36511399 to 36513213 1814 CpG island CpG island 144
Cnnm3 1 36511867 to 36528237 16370 + protein coding gene cyclin M3
Tssr6271 1 36511868 to 36511903 35 + TSS region transcription start site region 6271
Gm38033 1 36527534 to 36528237 703 - antisense lncRNA gene predicted gene, 38033
Gm42417 1 36530193 to 36539429 9236 - protein coding gene predicted gene, 42417
Ankrd23 1 36530193 to 36536556 6363 - protein coding gene ankyrin repeat domain 23
Tssr11259 1 36534727 to 36534734 7 - TSS region transcription start site region 11259
Tssr11260 1 36535719 to 36535764 45 - TSS region transcription start site region 11260
Ankrd39 1 36538171 to 36547440 9269 - protein coding gene ankyrin repeat domain 39
Cpgi145 1 36541798 to 36542132 334 CpG island CpG island 145
Cpgi146 1 36546768 to 36547643 875 CpG island CpG island 146
Tssr11261 1 36547194 to 36547233 39 - TSS region transcription start site region 11261
Sema4c 1 36548639 to 36558349 9710 - protein coding gene sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
Cpgi147 1 36552687 to 36553048 361 CpG island CpG island 147
Cpgi148 1 36556599 to 36558926 2327 CpG island CpG island 148
Tssr11262 1 36556661 to 36556691 30 - TSS region transcription start site region 11262
Tssr11263 1 36557517 to 36557561 44 - TSS region transcription start site region 11263
Tssr40 1 36557695 to 36557731 36 + TSS region transcription start site region 40
D430040D24Rik 1 36557701 to 36565613 7912 + unclassified non-coding RNA gene RIKEN cDNA D430040D24 gene
Tssr11264 1 36558182 to 36558212 30 - TSS region transcription start site region 11264
Tssr11265 1 36558214 to 36558266 52 - TSS region transcription start site region 11265
Tssr11266 1 36558350 to 36558366 16 - TSS region transcription start site region 11266
Fam178b 1 36562692 to 36683183 120491 - protein coding gene family with sequence similarity 178, member B
Tssr11267 1 36565611 to 36565613 2 - TSS region transcription start site region 11267
Tssr11268 1 36593315 to 36593338 23 - TSS region transcription start site region 11268
Gm6428 1 36601802 to 36602146 344 + pseudogene predicted pseudogene 6428
Tssr11269 1 36643977 to 36644008 31 - TSS region transcription start site region 11269
Gm24133 1 36663965 to 36664039 74 + miRNA gene predicted gene, 24133
Cpgi149 1 36682795 to 36683473 678 CpG island CpG island 149
Tssr11270 1 36683097 to 36683108 11 - TSS region transcription start site region 11270
Tssr11271 1 36683115 to 36683154 39 - TSS region transcription start site region 11271
Cpgi150 1 36691155 to 36692212 1057 CpG island CpG island 150
Cox5b 1 36691487 to 36693388 1901 + protein coding gene cytochrome c oxidase subunit 5B
Tssr6272 1 36691530 to 36691554 24 + TSS region transcription start site region 6272
Tssr41 1 36698495 to 36698496 1 + TSS region transcription start site region 41
Actr1b 1 36699200 to 36710017 10817 - protein coding gene ARP1 actin-related protein 1B, centractin beta
Tssr11272 1 36699774 to 36699778 4 - TSS region transcription start site region 11272
Tssr11273 1 36699909 to 36699933 24 - TSS region transcription start site region 11273
Tssr11274 1 36702158 to 36702185 27 - TSS region transcription start site region 11274
Tssr6273 1 36702408 to 36702409 1 + TSS region transcription start site region 6273
Cpgi151 1 36709514 to 36710223 709 CpG island CpG island 151
Tssr11275 1 36709904 to 36709978 74 - TSS region transcription start site region 11275
Tssr6274 1 36714524 to 36714576 52 + TSS region transcription start site region 6274
4933424G06Rik 1 36714538 to 36757960 43422 + lncRNA gene RIKEN cDNA 4933424G06 gene