Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:191309838-191841305

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nobq3 1 104005680 to 191493284 87487604 QTL New Zealand obese QTL 3
Liq1 1 167758517 to 191493284 23734767 QTL limb inflammation QTL 1
Nenf 1 191306797 to 191318118 11321 - protein coding gene neuron derived neurotrophic factor
Cpgi1221 1 191317349 to 191318253 904 CpG island CpG island 1221
Tssr10767 1 191317873 to 191317878 5 + TSS region transcription start site region 10767
Tssr15782 1 191318090 to 191318126 36 - TSS region transcription start site region 15782
Cpgi1222 1 191325685 to 191326678 993 CpG island CpG island 1222
Tmem206 1 191325912 to 191350914 25002 + protein coding gene transmembrane protein 206
Tssr10768 1 191325919 to 191325984 65 + TSS region transcription start site region 10768
Tssr10769 1 191325985 to 191325998 13 + TSS region transcription start site region 10769
Tssr10770 1 191328144 to 191328186 42 + TSS region transcription start site region 10770
Tssr10771 1 191332095 to 191332120 25 + TSS region transcription start site region 10771
Tssr10772 1 191339453 to 191339462 9 + TSS region transcription start site region 10772
Tssr15783 1 191348306 to 191348310 4 - TSS region transcription start site region 15783
Ppp2r5a 1 191351981 to 191397041 45060 - protein coding gene protein phosphatase 2, regulatory subunit B', alpha
Tssr15784 1 191363114 to 191363121 7 - TSS region transcription start site region 15784
Tssr15785 1 191370747 to 191370762 15 - TSS region transcription start site region 15785
Tssr15786 1 191378108 to 191378113 5 - TSS region transcription start site region 15786
Rab11b-ps1 1 191388616 to 191389460 844 + pseudogene RAB11B, member RAS oncogene family, pseudogene 1
Tssr15787 1 191393687 to 191393691 4 - TSS region transcription start site region 15787
Cpgi1223 1 191395914 to 191397916 2002 CpG island CpG island 1223
Tssr374 1 191396091 to 191396127 36 - TSS region transcription start site region 374
Tssr15788 1 191396567 to 191396592 25 - TSS region transcription start site region 15788
Tssr15789 1 191396922 to 191396962 40 - TSS region transcription start site region 15789
Tssr15790 1 191397026 to 191397041 15 - TSS region transcription start site region 15790
Tssr15791 1 191397044 to 191397061 17 - TSS region transcription start site region 15791
Tssr375 1 191397208 to 191397234 26 - TSS region transcription start site region 375
Gm20201 1 191397705 to 191415085 17380 - lncRNA gene predicted gene, 20201
Tssr15792 1 191403270 to 191403273 3 - TSS region transcription start site region 15792
D1Mit292 1 191403465 to 191403660 195 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 292
Gm2272 1 191407666 to 191408247 581 + pseudogene predicted gene 2272
Gm31987 1 191420174 to 191433682 13508 - lncRNA gene predicted gene, 31987
Gm32128 1 191420844 to 191422644 1800 + lncRNA gene predicted gene, 32128
Gm32200 1 191436340 to 191465048 28708 - lincRNA gene predicted gene, 32200
Tssr15793 1 191445803 to 191445818 15 - TSS region transcription start site region 15793
Tssr15794 1 191465323 to 191465343 20 - TSS region transcription start site region 15794
Gm37688 1 191477331 to 191477795 464 + pseudogene predicted gene, 37688
Gm32334 1 191487317 to 191491677 4360 + lncRNA gene predicted gene, 32334
Gm37432 1 191490910 to 191493905 2995 - lincRNA gene predicted gene, 37432
D1Mit209 1 191493187 to 191493284 97 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 209
Tssr376 1 191507878 to 191507880 2 + TSS region transcription start site region 376
Tssr15795 1 191519831 to 191519842 11 - TSS region transcription start site region 15795
9430037O13Rik 1 191535885 to 191536892 1007 - unclassified gene RIKEN cDNA 9430037O13 gene
Tssr377 1 191536575 to 191536578 3 - TSS region transcription start site region 377
Dtl 1 191537356 to 191575544 38188 - protein coding gene denticleless E3 ubiquitin protein ligase
Tssr15796 1 191541070 to 191541083 13 - TSS region transcription start site region 15796
Tssr15797 1 191541359 to 191541366 7 - TSS region transcription start site region 15797
Tssr15798 1 191565903 to 191565913 10 - TSS region transcription start site region 15798
Cpgi1224 1 191574838 to 191576305 1467 CpG island CpG island 1224
Tssr15799 1 191575490 to 191575526 36 - TSS region transcription start site region 15799
Tssr15800 1 191575537 to 191575549 12 - TSS region transcription start site region 15800
Tssr15801 1 191575550 to 191575557 7 - TSS region transcription start site region 15801
Ints7 1 191575636 to 191623688 48052 + protein coding gene integrator complex subunit 7
Tssr10773 1 191575721 to 191575792 71 + TSS region transcription start site region 10773
Gm37349 1 191597647 to 191598270 623 + unclassified gene predicted gene, 37349
Tssr10774 1 191611795 to 191611818 23 + TSS region transcription start site region 10774
Tssr10775 1 191623313 to 191623317 4 + TSS region transcription start site region 10775
Gm39741 1 191648221 to 191649177 956 - lncRNA gene predicted gene, 39741
Cpgi1225 1 191717704 to 191719534 1830 CpG island CpG island 1225
Lpgat1 1 191717834 to 191784255 66421 + protein coding gene lysophosphatidylglycerol acyltransferase 1
Tssr10776 1 191717880 to 191717904 24 + TSS region transcription start site region 10776
Tssr10777 1 191717993 to 191718030 37 + TSS region transcription start site region 10777
Tssr10778 1 191718035 to 191718061 26 + TSS region transcription start site region 10778
Tssr10779 1 191718070 to 191718090 20 + TSS region transcription start site region 10779
Tssr10780 1 191718255 to 191718313 58 + TSS region transcription start site region 10780
Tssr10781 1 191718378 to 191718394 16 + TSS region transcription start site region 10781
Tssr10782 1 191718395 to 191718431 36 + TSS region transcription start site region 10782
Tssr10783 1 191719164 to 191719229 65 + TSS region transcription start site region 10783
Tssr10784 1 191743115 to 191743140 25 + TSS region transcription start site region 10784
Gm22446 1 191762200 to 191762303 103 - snRNA gene predicted gene, 22446
Gm26203 1 191772721 to 191772834 113 - snRNA gene predicted gene, 26203
Tssr10785 1 191779677 to 191779681 4 + TSS region transcription start site region 10785
Gm20203 1 191790983 to 191791314 331 - pseudogene predicted gene, 20203
Tssr15802 1 191791368 to 191791375 7 - TSS region transcription start site region 15802
Tssr15803 1 191791402 to 191791403 1 - TSS region transcription start site region 15803
Tssr10786 1 191817385 to 191817401 16 + TSS region transcription start site region 10786
5430414B12Rik 1 191817395 to 191819541 2146 lncRNA gene RIKEN cDNA 5430414B12 gene
Tssr10787 1 191817439 to 191817452 13 + TSS region transcription start site region 10787
Tssr10788 1 191817467 to 191817478 11 + TSS region transcription start site region 10788
Gm38037 1 191820370 to 191821993 1623 - antisense lncRNA gene predicted gene, 38037
Cpgi1226 1 191820988 to 191822225 1237 CpG island CpG island 1226
Nek2 1 191821444 to 191833050 11606 + protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 2
Tssr10789 1 191821476 to 191821489 13 + TSS region transcription start site region 10789
Tssr10790 1 191821492 to 191821568 76 + TSS region transcription start site region 10790
Gm20585 1 191827909 to 191828606 697 + pseudogene predicted gene, 20585
Cpgi1227 1 191834852 to 191835124 272 CpG island CpG island 1227