Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:189910124-192141682

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335 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nobq3 1 104005680 to 191493284 87487604 QTL New Zealand obese QTL 3
Berr1 1 164315658 to 190802075 26486417 QTL berghei resistance locus 1
Liq1 1 167758517 to 191493284 23734767 QTL limb inflammation QTL 1
Smyd2 1 189880492 to 189922363 41871 - protein coding gene SET and MYND domain containing 2
Gm38245 1 189913339 to 189915959 2620 - unclassified gene predicted gene, 38245
Cpgi1202 1 189921594 to 189922880 1286 CpG island CpG island 1202
Tssr15725 1 189922252 to 189922327 75 - TSS region transcription start site region 15725
Tssr15726 1 189922338 to 189922357 19 - TSS region transcription start site region 15726
Tssr15727 1 189922371 to 189922393 22 - TSS region transcription start site region 15727
Tssr15728 1 189922405 to 189922416 11 - TSS region transcription start site region 15728
D1Mit117 1 189923915 to 189924016 101 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 117
Gm39736 1 190039479 to 190045148 5669 - lncRNA gene predicted gene, 39736
Gm30446 1 190048724 to 190091303 42579 + lncRNA gene predicted gene, 30446
Tssr10700 1 190059323 to 190059325 2 + TSS region transcription start site region 10700
D1Mit56 1 190071515 to 190071637 122 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 56
Tssr370 1 190116784 to 190116787 3 + TSS region transcription start site region 370
Prox1 1 190118035 to 190170680 52645 - protein coding gene prospero homeobox 1
Tssr15729 1 190144207 to 190144210 3 - TSS region transcription start site region 15729
Tssr15730 1 190144495 to 190144520 25 - TSS region transcription start site region 15730
Tssr15731 1 190144551 to 190144561 10 - TSS region transcription start site region 15731
Tssr10701 1 190159792 to 190159817 25 + TSS region transcription start site region 10701
Cpgi1203 1 190161163 to 190161438 275 CpG island CpG island 1203
Gm28172 1 190168670 to 190169633 963 + antisense lncRNA gene predicted gene 28172
Cpgi1204 1 190168806 to 190169569 763 CpG island CpG island 1204
Tssr15732 1 190169506 to 190169526 20 - TSS region transcription start site region 15732
Cpgi1205 1 190170021 to 190171056 1035 CpG island CpG island 1205
Tssr15733 1 190170178 to 190170212 34 - TSS region transcription start site region 15733
Tssr371 1 190170263 to 190170268 5 + TSS region transcription start site region 371
Tssr10702 1 190170281 to 190170301 20 + TSS region transcription start site region 10702
Prox1os 1 190170296 to 190217276 46980 + antisense lncRNA gene prospero homeobox 1, opposite strand
Tssr10703 1 190170322 to 190170331 9 + TSS region transcription start site region 10703
Tssr10704 1 190170341 to 190170358 17 + TSS region transcription start site region 10704
Tssr15734 1 190170671 to 190170744 73 - TSS region transcription start site region 15734
Tssr15735 1 190170821 to 190170832 11 - TSS region transcription start site region 15735
Tssr10705 1 190171085 to 190171087 2 + TSS region transcription start site region 10705
Tssr10706 1 190172047 to 190172054 7 + TSS region transcription start site region 10706
Cpgi1206 1 190172464 to 190173192 728 CpG island CpG island 1206
Cpgi1207 1 190174480 to 190175724 1244 CpG island CpG island 1207
D1Dcr45 1 190193799 to 190193898 99 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 45
D1Mit241 1 190350775 to 190350908 133 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 241
Gm39737 1 190391763 to 190398524 6761 - lncRNA gene predicted gene, 39737
Gm29678 1 190403645 to 190417145 13500 + lincRNA gene predicted gene, 29678
Gm30725 1 190419333 to 190444855 25522 - lincRNA gene predicted gene, 30725
Gm30815 1 190456180 to 190465694 9514 - lncRNA gene predicted gene, 30815
Tssr15736 1 190465686 to 190465699 13 - TSS region transcription start site region 15736
Gm23153 1 190482845 to 190483157 312 - unclassified non-coding RNA gene predicted gene, 23153
Gm47294 1 190482929 to 190483016 87 - miRNA gene predicted gene, 47294
Cpgi1208 1 190483146 to 190483384 238 CpG island CpG island 1208
Gm30932 1 190594268 to 190597119 2851 + lincRNA gene predicted gene, 30932
Tssr10707 1 190594300 to 190594314 14 + TSS region transcription start site region 10707
Tssr10708 1 190596535 to 190596554 19 + TSS region transcription start site region 10708
Tssr10709 1 190596561 to 190596584 23 + TSS region transcription start site region 10709
Tssr15737 1 190617472 to 190617473 1 - TSS region transcription start site region 15737
Cpgi1209 1 190682105 to 190682426 321 CpG island CpG island 1209
Cpgi1210 1 190690541 to 190690925 384 CpG island CpG island 1210
Gm38452 1 190700216 to 190729672 29456 - lncRNA gene predicted gene, 38452
Tssr10710 1 190714077 to 190714079 2 + TSS region transcription start site region 10710
Gm39738 1 190760656 to 190765573 4917 + lncRNA gene predicted gene, 39738
Tssr10711 1 190760957 to 190760966 9 + TSS region transcription start site region 10711
Rps6kc1 1 190772879 to 190912140 139261 - protein coding gene ribosomal protein S6 kinase polypeptide 1
D1Mit462 1 190801955 to 190802075 120 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 462
D1Mit462.2 1 190802070 to 190802270 200 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 462.2
Cpgi1211 1 190911443 to 190912216 773 CpG island CpG island 1211
Tssr15738 1 190911708 to 190911719 11 - TSS region transcription start site region 15738
Tssr15739 1 190911728 to 190911802 74 - TSS region transcription start site region 15739
Tssr15740 1 190911803 to 190911810 7 - TSS region transcription start site region 15740
Tssr10712 1 190911803 to 190911832 29 + TSS region transcription start site region 10712
Tssr10713 1 190911865 to 190911873 8 + TSS region transcription start site region 10713
Tssr10714 1 190916735 to 190916739 4 + TSS region transcription start site region 10714
Angel2 1 190925112 to 190946962 21850 + protein coding gene angel homolog 2
Cpgi1212 1 190928176 to 190929233 1057 CpG island CpG island 1212
Tssr10715 1 190928501 to 190928550 49 + TSS region transcription start site region 10715
Tssr10716 1 190928573 to 190928652 79 + TSS region transcription start site region 10716
Tssr10717 1 190928829 to 190928888 59 + TSS region transcription start site region 10717
Tssr10718 1 190942410 to 190942413 3 + TSS region transcription start site region 10718
Vash2 1 190947646 to 190979296 31650 - protein coding gene vasohibin 2
Cpgi1213 1 190949063 to 190949336 273 CpG island CpG island 1213
Cpgi1214 1 190978027 to 190979608 1581 CpG island CpG island 1214
Tssr15741 1 190978954 to 190978998 44 - TSS region transcription start site region 15741
Tssr15742 1 190979144 to 190979154 10 - TSS region transcription start site region 15742
Tssr15743 1 190979160 to 190979178 18 - TSS region transcription start site region 15743
Tssr15744 1 190979183 to 190979190 7 - TSS region transcription start site region 15744
Tssr15745 1 190979195 to 190979232 37 - TSS region transcription start site region 15745
Tssr15746 1 190979261 to 190979272 11 - TSS region transcription start site region 15746
Tssr15747 1 190979280 to 190979302 22 - TSS region transcription start site region 15747
Gm31373 1 190992692 to 190994677 1985 + lincRNA gene predicted gene, 31373
Tssr10719 1 190992795 to 190992835 40 + TSS region transcription start site region 10719
Gm37095 1 191000594 to 191000798 204 - pseudogene predicted gene, 37095
Gm8407 1 191001425 to 191001851 426 - pseudogene predicted gene 8407
Flvcr1 1 191005847 to 191026158 20311 - protein coding gene feline leukemia virus subgroup C cellular receptor 1
Tssr15748 1 191020393 to 191020405 12 - TSS region transcription start site region 15748
Cpgi1215 1 191025124 to 191026682 1558 CpG island CpG island 1215
A230020J21Rik 1 191025351 to 191029781 4430 + antisense lncRNA gene RIKEN cDNA A230020J21 gene
Tssr15749 1 191026013 to 191026036 23 - TSS region transcription start site region 15749
Tssr15750 1 191026181 to 191026197 16 - TSS region transcription start site region 15750
Spata45 1 191036639 to 191042942 6303 + protein coding gene spermatogenesis associated 45
Tssr10720 1 191036812 to 191036825 13 + TSS region transcription start site region 10720
Tssr10721 1 191036829 to 191036838 9 + TSS region transcription start site region 10721
Tatdn3 1 191045826 to 191062932 17106 - protein coding gene TatD DNase domain containing 3
Cpgi1216 1 191062599 to 191063513 914 CpG island CpG island 1216
Tssr15751 1 191062876 to 191062887 11 - TSS region transcription start site region 15751
Tssr15752 1 191062896 to 191062911 15 - TSS region transcription start site region 15752
Nsl1 1 191062993 to 191084558 21565 + protein coding gene NSL1, MIS12 kinetochore complex component
Tssr10722 1 191063001 to 191063038 37 + TSS region transcription start site region 10722
Tssr10723 1 191069193 to 191069199 6 + TSS region transcription start site region 10723
Gm38188 1 191077825 to 191078680 855 - antisense lncRNA gene predicted gene, 38188
Tssr10724 1 191085853 to 191085881 28 + TSS region transcription start site region 10724
Tssr15753 1 191096092 to 191096098 6 - TSS region transcription start site region 15753
Tssr15754 1 191096232 to 191096275 43 - TSS region transcription start site region 15754
Cpgi1217 1 191097699 to 191098900 1201 CpG island CpG island 1217
Tssr10725 1 191097833 to 191097859 26 + TSS region transcription start site region 10725
Tssr10726 1 191097866 to 191097887 21 + TSS region transcription start site region 10726
Tssr10727 1 191097892 to 191097904 12 + TSS region transcription start site region 10727
Tssr15755 1 191098225 to 191098290 65 - TSS region transcription start site region 15755
Tssr10728 1 191098406 to 191098436 30 + TSS region transcription start site region 10728
Batf3 1 191098414 to 191108943 10529 + protein coding gene basic leucine zipper transcription factor, ATF-like 3
Tssr15756 1 191111959 to 191111971 12 - TSS region transcription start site region 15756
Gm46178 1 191120902 to 191125328 4426 + lncRNA gene predicted gene, 46178
Tssr10729 1 191121036 to 191121047 11 + TSS region transcription start site region 10729
Tssr10730 1 191121049 to 191121078 29 + TSS region transcription start site region 10730
Cpgi1218 1 191125832 to 191126260 428 CpG island CpG island 1218
Gm31640 1 191130198 to 191132797 2599 - lncRNA gene predicted gene, 31640
Gm38161 1 191132657 to 191134014 1357 + lincRNA gene predicted gene, 38161
Gm31696 1 191137983 to 191139839 1856 - lncRNA gene predicted gene, 31696
Fam71a 1 191162584 to 191164817 2233 - protein coding gene family with sequence similarity 71, member A
Tssr15757 1 191164815 to 191164818 3 - TSS region transcription start site region 15757
Atf3 1 191170296 to 191183333 13037 - protein coding gene activating transcription factor 3
Tssr10731 1 191171610 to 191171648 38 + TSS region transcription start site region 10731
Tssr10732 1 191172364 to 191172411 47 + TSS region transcription start site region 10732
Tssr15758 1 191176709 to 191176731 22 - TSS region transcription start site region 15758
Tssr15759 1 191177133 to 191177145 12 - TSS region transcription start site region 15759
Tssr15760 1 191177361 to 191177379 18 - TSS region transcription start site region 15760
Tssr15761 1 191181566 to 191181577 11 - TSS region transcription start site region 15761
Tssr15762 1 191181967 to 191181978 11 - TSS region transcription start site region 15762
Cpgi1219 1 191182359 to 191185754 3395 CpG island CpG island 1219
Tssr10733 1 191182374 to 191182400 26 + TSS region transcription start site region 10733
Tssr15763 1 191183244 to 191183260 16 - TSS region transcription start site region 15763
Tssr10734 1 191183492 to 191183505 13 + TSS region transcription start site region 10734
Tssr10735 1 191183551 to 191183596 45 + TSS region transcription start site region 10735
Tssr10736 1 191183681 to 191183710 29 + TSS region transcription start site region 10736
Tssr15764 1 191184999 to 191185009 10 - TSS region transcription start site region 15764
Tssr10737 1 191185879 to 191185922 43 + TSS region transcription start site region 10737
Tssr15765 1 191186457 to 191186492 35 - TSS region transcription start site region 15765
Tssr10738 1 191186688 to 191186701 13 + TSS region transcription start site region 10738
Tssr15766 1 191189928 to 191189942 14 - TSS region transcription start site region 15766
Tssr10739 1 191190093 to 191190136 43 + TSS region transcription start site region 10739
Tssr10740 1 191192609 to 191192625 16 + TSS region transcription start site region 10740
Tssr10741 1 191194028 to 191194072 44 + TSS region transcription start site region 10741
Tssr10742 1 191194303 to 191194321 18 + TSS region transcription start site region 10742
Gm24748 1 191196906 to 191197013 107 + unclassified non-coding RNA gene predicted gene, 24748
Tssr15767 1 191199289 to 191199296 7 - TSS region transcription start site region 15767
Tssr15768 1 191201249 to 191201279 30 - TSS region transcription start site region 15768
Tssr10743 1 191201471 to 191201499 28 + TSS region transcription start site region 10743
Tssr15769 1 191217932 to 191217959 27 - TSS region transcription start site region 15769
Cpgi1220 1 191223843 to 191225021 1178 CpG island CpG island 1220
D730003I15Rik 1 191224408 to 191225688 1280 + lincRNA gene RIKEN cDNA D730003I15 gene
Tssr10744 1 191224443 to 191224461 18 + TSS region transcription start site region 10744
Tssr10745 1 191224462 to 191224521 59 + TSS region transcription start site region 10745
Tssr372 1 191224847 to 191224856 9 - TSS region transcription start site region 372
Tssr15770 1 191224911 to 191224969 58 - TSS region transcription start site region 15770
Tssr15771 1 191224976 to 191224987 11 - TSS region transcription start site region 15771
Tssr10746 1 191225046 to 191225062 16 + TSS region transcription start site region 10746
Tssr15772 1 191225259 to 191225265 6 - TSS region transcription start site region 15772
Tssr15773 1 191225272 to 191225286 14 - TSS region transcription start site region 15773
Tssr10747 1 191225440 to 191225467 27 + TSS region transcription start site region 10747
Tssr15774 1 191230396 to 191230424 28 - TSS region transcription start site region 15774
Tssr15775 1 191232741 to 191232748 7 - TSS region transcription start site region 15775
Tssr15776 1 191239599 to 191239608 9 - TSS region transcription start site region 15776
Tssr10748 1 191239911 to 191239916 5 + TSS region transcription start site region 10748
Tssr15777 1 191242180 to 191242203 23 - TSS region transcription start site region 15777
Tssr10749 1 191247907 to 191247941 34 + TSS region transcription start site region 10749
Gm37074 1 191249424 to 191251266 1842 + unclassified gene predicted gene, 37074
Tssr15778 1 191253738 to 191253752 14 - TSS region transcription start site region 15778
Tssr10750 1 191266813 to 191266836 23 + TSS region transcription start site region 10750
Tssr10751 1 191266854 to 191266885 31 + TSS region transcription start site region 10751
Tssr10752 1 191266886 to 191266927 41 + TSS region transcription start site region 10752
Tssr10753 1 191267004 to 191267016 12 + TSS region transcription start site region 10753
Tssr10754 1 191267052 to 191267061 9 + TSS region transcription start site region 10754
Tssr10755 1 191267077 to 191267091 14 + TSS region transcription start site region 10755
Tssr10756 1 191267125 to 191267137 12 + TSS region transcription start site region 10756
Tssr15779 1 191269316 to 191269318 2 - TSS region transcription start site region 15779
Tssr15780 1 191270172 to 191270190 18 - TSS region transcription start site region 15780
Tssr10757 1 191272612 to 191272617 5 + TSS region transcription start site region 10757
Tssr10758 1 191275831 to 191275840 9 + TSS region transcription start site region 10758
Tssr10759 1 191275952 to 191275959 7 + TSS region transcription start site region 10759
Tssr15781 1 191277615 to 191277628 13 - TSS region transcription start site region 15781
Tssr373 1 191280827 to 191280829 2 - TSS region transcription start site region 373
Tssr10760 1 191281414 to 191281417 3 + TSS region transcription start site region 10760
Tssr10761 1 191281423 to 191281437 14 + TSS region transcription start site region 10761
Tssr10762 1 191281453 to 191281464 11 + TSS region transcription start site region 10762
Tssr10763 1 191281467 to 191281479 12 + TSS region transcription start site region 10763
Tssr10764 1 191281497 to 191281502 5 + TSS region transcription start site region 10764
Gm37168 1 191287535 to 191288722 1187 + lincRNA gene predicted gene, 37168
Tssr10765 1 191290715 to 191290750 35 + TSS region transcription start site region 10765
Tssr10766 1 191299549 to 191299559 10 + TSS region transcription start site region 10766
Nenf 1 191306797 to 191318118 11321 - protein coding gene neuron derived neurotrophic factor
Cpgi1221 1 191317349 to 191318253 904 CpG island CpG island 1221
Tssr10767 1 191317873 to 191317878 5 + TSS region transcription start site region 10767
Tssr15782 1 191318090 to 191318126 36 - TSS region transcription start site region 15782
Cpgi1222 1 191325685 to 191326678 993 CpG island CpG island 1222