Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:189785686-191145699

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142 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Berr1 1 164315658 to 190802075 26486417 QTL berghei resistance locus 1
Ptpn14 1 189728268 to 189876695 148427 + protein coding gene protein tyrosine phosphatase, non-receptor type 14
Cpgi1200 1 189786670 to 189787028 358 CpG island CpG island 1200
Tssr10694 1 189798526 to 189798538 12 + TSS region transcription start site region 10694
Cpgi1201 1 189799057 to 189799240 183 CpG island CpG island 1201
V25Dq2 1 189800000 to 189800000 0 QTL vitamin D inactive form serum level QTL 2
Tssr10695 1 189827213 to 189827228 15 + TSS region transcription start site region 10695
Gm30280 1 189827230 to 189827491 261 + pseudogene predicted gene, 30280
Gm26574 1 189833141 to 189836620 3479 - antisense lncRNA gene predicted gene, 26574
Tssr10696 1 189844663 to 189844669 6 + TSS region transcription start site region 10696
Tssr10697 1 189860375 to 189860386 11 + TSS region transcription start site region 10697
Tssr15721 1 189867178 to 189867187 9 - TSS region transcription start site region 15721
Tssr10698 1 189879903 to 189879910 7 + TSS region transcription start site region 10698
Tssr10699 1 189879929 to 189879941 12 + TSS region transcription start site region 10699
Gm37422 1 189879935 to 189884652 4717 + antisense lncRNA gene predicted gene, 37422
Smyd2 1 189880492 to 189922363 41871 - protein coding gene SET and MYND domain containing 2
Tssr15722 1 189883977 to 189883999 22 - TSS region transcription start site region 15722
D1Mit409 1 189896713 to 189896809 96 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 409
D1Mit409.1 1 189896839 to 189896971 132 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 409.1
Tssr15723 1 189899631 to 189899653 22 - TSS region transcription start site region 15723
V25Dq1 1 189900000 to 189900000 0 QTL vitamin D inactive form serum level QTL 1
Tssr15724 1 189901705 to 189901709 4 - TSS region transcription start site region 15724
Gm38245 1 189913339 to 189915959 2620 - unclassified gene predicted gene, 38245
Cpgi1202 1 189921594 to 189922880 1286 CpG island CpG island 1202
Tssr15725 1 189922252 to 189922327 75 - TSS region transcription start site region 15725
Tssr15726 1 189922338 to 189922357 19 - TSS region transcription start site region 15726
Tssr15727 1 189922371 to 189922393 22 - TSS region transcription start site region 15727
Tssr15728 1 189922405 to 189922416 11 - TSS region transcription start site region 15728
D1Mit117 1 189923915 to 189924016 101 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 117
Gm39736 1 190039479 to 190045148 5669 - lncRNA gene predicted gene, 39736
Gm30446 1 190048724 to 190091303 42579 + lncRNA gene predicted gene, 30446
Tssr10700 1 190059323 to 190059325 2 + TSS region transcription start site region 10700
D1Mit56 1 190071515 to 190071637 122 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 56
Tssr370 1 190116784 to 190116787 3 + TSS region transcription start site region 370
Prox1 1 190118035 to 190170680 52645 - protein coding gene prospero homeobox 1
Tssr15729 1 190144207 to 190144210 3 - TSS region transcription start site region 15729
Tssr15730 1 190144495 to 190144520 25 - TSS region transcription start site region 15730
Tssr15731 1 190144551 to 190144561 10 - TSS region transcription start site region 15731
Tssr10701 1 190159792 to 190159817 25 + TSS region transcription start site region 10701
Cpgi1203 1 190161163 to 190161438 275 CpG island CpG island 1203
Gm28172 1 190168670 to 190169633 963 + antisense lncRNA gene predicted gene 28172
Cpgi1204 1 190168806 to 190169569 763 CpG island CpG island 1204
Tssr15732 1 190169506 to 190169526 20 - TSS region transcription start site region 15732
Cpgi1205 1 190170021 to 190171056 1035 CpG island CpG island 1205
Tssr15733 1 190170178 to 190170212 34 - TSS region transcription start site region 15733
Tssr371 1 190170263 to 190170268 5 + TSS region transcription start site region 371
Tssr10702 1 190170281 to 190170301 20 + TSS region transcription start site region 10702
Prox1os 1 190170296 to 190217276 46980 + antisense lncRNA gene prospero homeobox 1, opposite strand
Tssr10703 1 190170322 to 190170331 9 + TSS region transcription start site region 10703
Tssr10704 1 190170341 to 190170358 17 + TSS region transcription start site region 10704
Tssr15734 1 190170671 to 190170744 73 - TSS region transcription start site region 15734
Tssr15735 1 190170821 to 190170832 11 - TSS region transcription start site region 15735
Tssr10705 1 190171085 to 190171087 2 + TSS region transcription start site region 10705
Tssr10706 1 190172047 to 190172054 7 + TSS region transcription start site region 10706
Cpgi1206 1 190172464 to 190173192 728 CpG island CpG island 1206
Cpgi1207 1 190174480 to 190175724 1244 CpG island CpG island 1207
D1Dcr45 1 190193799 to 190193898 99 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 45
D1Mit241 1 190350775 to 190350908 133 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 241
Gm39737 1 190391763 to 190398524 6761 - lncRNA gene predicted gene, 39737
Gm29678 1 190403645 to 190417145 13500 + lincRNA gene predicted gene, 29678
Gm30725 1 190419333 to 190444855 25522 - lincRNA gene predicted gene, 30725
Gm30815 1 190456180 to 190465694 9514 - lncRNA gene predicted gene, 30815
Tssr15736 1 190465686 to 190465699 13 - TSS region transcription start site region 15736
Gm23153 1 190482845 to 190483157 312 - unclassified non-coding RNA gene predicted gene, 23153
Gm47294 1 190482929 to 190483016 87 - miRNA gene predicted gene, 47294
Cpgi1208 1 190483146 to 190483384 238 CpG island CpG island 1208
Gm30932 1 190594268 to 190597119 2851 + lincRNA gene predicted gene, 30932
Tssr10707 1 190594300 to 190594314 14 + TSS region transcription start site region 10707
Tssr10708 1 190596535 to 190596554 19 + TSS region transcription start site region 10708
Tssr10709 1 190596561 to 190596584 23 + TSS region transcription start site region 10709
Tssr15737 1 190617472 to 190617473 1 - TSS region transcription start site region 15737
Cpgi1209 1 190682105 to 190682426 321 CpG island CpG island 1209
Cpgi1210 1 190690541 to 190690925 384 CpG island CpG island 1210
Gm38452 1 190700216 to 190729672 29456 - lncRNA gene predicted gene, 38452
Tssr10710 1 190714077 to 190714079 2 + TSS region transcription start site region 10710
Gm39738 1 190760656 to 190765573 4917 + lncRNA gene predicted gene, 39738
Tssr10711 1 190760957 to 190760966 9 + TSS region transcription start site region 10711
Rps6kc1 1 190772879 to 190912140 139261 - protein coding gene ribosomal protein S6 kinase polypeptide 1
D1Mit462 1 190801955 to 190802075 120 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 462
D1Mit462.2 1 190802070 to 190802270 200 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 462.2
Cpgi1211 1 190911443 to 190912216 773 CpG island CpG island 1211
Tssr15738 1 190911708 to 190911719 11 - TSS region transcription start site region 15738
Tssr15739 1 190911728 to 190911802 74 - TSS region transcription start site region 15739
Tssr10712 1 190911803 to 190911832 29 + TSS region transcription start site region 10712
Tssr15740 1 190911803 to 190911810 7 - TSS region transcription start site region 15740
Tssr10713 1 190911865 to 190911873 8 + TSS region transcription start site region 10713
Tssr10714 1 190916735 to 190916739 4 + TSS region transcription start site region 10714
Angel2 1 190925112 to 190946962 21850 + protein coding gene angel homolog 2
Cpgi1212 1 190928176 to 190929233 1057 CpG island CpG island 1212
Tssr10715 1 190928501 to 190928550 49 + TSS region transcription start site region 10715
Tssr10716 1 190928573 to 190928652 79 + TSS region transcription start site region 10716
Tssr10717 1 190928829 to 190928888 59 + TSS region transcription start site region 10717
Tssr10718 1 190942410 to 190942413 3 + TSS region transcription start site region 10718
Vash2 1 190947646 to 190979296 31650 - protein coding gene vasohibin 2
Cpgi1213 1 190949063 to 190949336 273 CpG island CpG island 1213
Cpgi1214 1 190978027 to 190979608 1581 CpG island CpG island 1214
Tssr15741 1 190978954 to 190978998 44 - TSS region transcription start site region 15741
Tssr15742 1 190979144 to 190979154 10 - TSS region transcription start site region 15742
Tssr15743 1 190979160 to 190979178 18 - TSS region transcription start site region 15743
Tssr15744 1 190979183 to 190979190 7 - TSS region transcription start site region 15744
Tssr15745 1 190979195 to 190979232 37 - TSS region transcription start site region 15745
Tssr15746 1 190979261 to 190979272 11 - TSS region transcription start site region 15746
Tssr15747 1 190979280 to 190979302 22 - TSS region transcription start site region 15747
Gm31373 1 190992692 to 190994677 1985 + lincRNA gene predicted gene, 31373
Tssr10719 1 190992795 to 190992835 40 + TSS region transcription start site region 10719
Gm37095 1 191000594 to 191000798 204 - pseudogene predicted gene, 37095
Gm8407 1 191001425 to 191001851 426 - pseudogene predicted gene 8407
Flvcr1 1 191005847 to 191026158 20311 - protein coding gene feline leukemia virus subgroup C cellular receptor 1
Tssr15748 1 191020393 to 191020405 12 - TSS region transcription start site region 15748
Cpgi1215 1 191025124 to 191026682 1558 CpG island CpG island 1215
A230020J21Rik 1 191025351 to 191029781 4430 + antisense lncRNA gene RIKEN cDNA A230020J21 gene
Tssr15749 1 191026013 to 191026036 23 - TSS region transcription start site region 15749
Tssr15750 1 191026181 to 191026197 16 - TSS region transcription start site region 15750
Spata45 1 191036639 to 191042942 6303 + protein coding gene spermatogenesis associated 45
Tssr10720 1 191036812 to 191036825 13 + TSS region transcription start site region 10720
Tssr10721 1 191036829 to 191036838 9 + TSS region transcription start site region 10721
Tatdn3 1 191045826 to 191062932 17106 - protein coding gene TatD DNase domain containing 3
Cpgi1216 1 191062599 to 191063513 914 CpG island CpG island 1216
Tssr15751 1 191062876 to 191062887 11 - TSS region transcription start site region 15751
Tssr15752 1 191062896 to 191062911 15 - TSS region transcription start site region 15752
Nsl1 1 191062993 to 191084558 21565 + protein coding gene NSL1, MIS12 kinetochore complex component
Tssr10722 1 191063001 to 191063038 37 + TSS region transcription start site region 10722
Tssr10723 1 191069193 to 191069199 6 + TSS region transcription start site region 10723
Gm38188 1 191077825 to 191078680 855 - antisense lncRNA gene predicted gene, 38188
Tssr10724 1 191085853 to 191085881 28 + TSS region transcription start site region 10724
Tssr15753 1 191096092 to 191096098 6 - TSS region transcription start site region 15753
Tssr15754 1 191096232 to 191096275 43 - TSS region transcription start site region 15754
Cpgi1217 1 191097699 to 191098900 1201 CpG island CpG island 1217
Tssr10725 1 191097833 to 191097859 26 + TSS region transcription start site region 10725
Tssr10726 1 191097866 to 191097887 21 + TSS region transcription start site region 10726
Tssr10727 1 191097892 to 191097904 12 + TSS region transcription start site region 10727
Tssr15755 1 191098225 to 191098290 65 - TSS region transcription start site region 15755
Tssr10728 1 191098406 to 191098436 30 + TSS region transcription start site region 10728
Batf3 1 191098414 to 191108943 10529 + protein coding gene basic leucine zipper transcription factor, ATF-like 3
Tssr15756 1 191111959 to 191111971 12 - TSS region transcription start site region 15756
Gm46178 1 191120902 to 191125328 4426 + lncRNA gene predicted gene, 46178
Tssr10729 1 191121036 to 191121047 11 + TSS region transcription start site region 10729
Tssr10730 1 191121049 to 191121078 29 + TSS region transcription start site region 10730
Cpgi1218 1 191125832 to 191126260 428 CpG island CpG island 1218
Gm31640 1 191130198 to 191132797 2599 - lncRNA gene predicted gene, 31640
Gm38161 1 191132657 to 191134014 1357 + lincRNA gene predicted gene, 38161
Gm31696 1 191137983 to 191139839 1856 - lncRNA gene predicted gene, 31696