Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:187783100-188983112

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52 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lgaq3 1 150317922 to 188627115 38309193 QTL late growth adjusted QTL 3
Lgq4 1 150317922 to 188627115 38309193 QTL late growth QTL 4
Splq5 1 150317922 to 188627115 38309193 QTL spleen weight QTL 5
Esrrg 1 187608791 to 188214884 606093 + protein coding gene estrogen-related receptor gamma
Tssr10664 1 187796264 to 187796268 4 + TSS region transcription start site region 10664
Tssr10665 1 187803503 to 187803528 25 + TSS region transcription start site region 10665
Tssr10666 1 187804968 to 187804988 20 + TSS region transcription start site region 10666
Tssr10667 1 187810393 to 187810396 3 + TSS region transcription start site region 10667
Tssr10668 1 187843308 to 187843321 13 + TSS region transcription start site region 10668
Tssr10669 1 187890669 to 187890672 3 + TSS region transcription start site region 10669
Tssr10670 1 187898646 to 187898652 6 + TSS region transcription start site region 10670
Renaq1 1 187901038 to 187931168 30130 QTL renal aging QTL 1
Tssr10671 1 187919288 to 187919306 18 + TSS region transcription start site region 10671
Tssr367 1 187942907 to 187942910 3 + TSS region transcription start site region 367
Tssr10672 1 187943320 to 187943331 11 + TSS region transcription start site region 10672
Tssr10673 1 187943334 to 187943345 11 + TSS region transcription start site region 10673
Tssr10674 1 187956816 to 187956821 5 + TSS region transcription start site region 10674
Tssr10675 1 187981766 to 187981770 4 + TSS region transcription start site region 10675
Cpgi1189 1 187997611 to 187998263 652 CpG island CpG island 1189
Tssr10676 1 187997821 to 187997834 13 + TSS region transcription start site region 10676
Tssr10677 1 187997835 to 187997882 47 + TSS region transcription start site region 10677
9330162B11Rik 1 188006576 to 188008990 2414 - antisense lncRNA gene RIKEN cDNA 9330162B11 gene
Tssr10678 1 188055006 to 188055010 4 + TSS region transcription start site region 10678
Cpgi1190 1 188077784 to 188077995 211 CpG island CpG island 1190
Tssr10679 1 188154333 to 188154342 9 + TSS region transcription start site region 10679
Gm38315 1 188160707 to 188163143 2436 + unclassified gene predicted gene, 38315
Gm38064 1 188246140 to 188257885 11745 + lincRNA gene predicted gene, 38064
Tssr10680 1 188261981 to 188261992 11 + TSS region transcription start site region 10680
Tssr10681 1 188262017 to 188262028 11 + TSS region transcription start site region 10681
Ush2a 1 188262838 to 188965497 702659 + protein coding gene usherin
Tssr368 1 188262899 to 188262903 4 + TSS region transcription start site region 368
Cpgi1191 1 188263217 to 188263466 249 CpG island CpG island 1191
Tssr15704 1 188320830 to 188320834 4 - TSS region transcription start site region 15704
Tssr10682 1 188383100 to 188383112 12 + TSS region transcription start site region 10682
D1Dcr19 1 188419328 to 188419425 97 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 19
Gm39735 1 188541863 to 188550579 8716 - lncRNA gene predicted gene, 39735
Gm36456 1 188583002 to 188608529 25527 - lncRNA gene predicted gene, 36456
Gm25095 1 188622923 to 188623053 130 - snoRNA gene predicted gene, 25095
D1Mit223 1 188626970 to 188627115 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 223
Tssr369 1 188654651 to 188654681 30 + TSS region transcription start site region 369
Tssr10683 1 188654683 to 188654692 9 + TSS region transcription start site region 10683
Tssr10684 1 188680499 to 188680501 2 + TSS region transcription start site region 10684
Tssr10685 1 188680587 to 188680599 12 + TSS region transcription start site region 10685
Cpgi1192 1 188714184 to 188714350 166 CpG island CpG island 1192
Tssr10686 1 188727011 to 188727012 1 + TSS region transcription start site region 10686
Gm25269 1 188760476 to 188760579 103 + snRNA gene predicted gene, 25269
D1Mit274 1 188862317 to 188862462 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 274
Sle1c 1 188862317 to 189571420 709103 QTL systematic lupus erythematosus susceptibility 1c
n-TNgtt3 1 188941406 to 188941479 73 + tRNA gene nuclear encoded tRNA asparagine 3 (anticodon GTT)
D1Dcr20 1 188964007 to 188964105 98 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 20
Kctd3 1 188971095 to 189007841 36746 - protein coding gene potassium channel tetramerisation domain containing 3
Tssr15705 1 188978404 to 188978427 23 - TSS region transcription start site region 15705