Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:186745548-187685559

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rrp15 1 186721086 to 186749358 28272 - protein coding gene ribosomal RNA processing 15 homolog (S. cerevisiae)
Cpgi1177 1 186748998 to 186749609 611 CpG island CpG island 1177
Tssr15694 1 186749284 to 186749293 9 - TSS region transcription start site region 15694
Tssr15695 1 186749304 to 186749340 36 - TSS region transcription start site region 15695
Tssr10634 1 186749368 to 186749415 47 + TSS region transcription start site region 10634
A430105J06Rik 1 186749396 to 186752921 3525 + lincRNA gene RIKEN cDNA A430105J06 gene
Cpgi1178 1 186833359 to 186833625 266 CpG island CpG island 1178
Cpgi1179 1 186833918 to 186834812 894 CpG island CpG island 1179
Cpgi1180 1 186858479 to 186858737 258 CpG island CpG island 1180
Gm39732 1 186917168 to 186942292 25124 - lncRNA gene predicted gene, 39732
Tssr10635 1 186926908 to 186926934 26 + TSS region transcription start site region 10635
1700023G09Rik 1 186926933 to 186930112 3179 + lincRNA gene RIKEN cDNA 1700023G09 gene
Gm39731 1 186941358 to 186945976 4618 + lncRNA gene predicted gene, 39731
Tssr10636 1 186960433 to 186960436 3 + TSS region transcription start site region 10636
Gm3809 1 186960508 to 186961513 1005 + pseudogene predicted gene 3809
Gm37912 1 186964528 to 186967603 3075 - antisense lncRNA gene predicted gene, 37912
Tssr10637 1 186967075 to 186967085 10 + TSS region transcription start site region 10637
Tssr10638 1 186967087 to 186967108 21 + TSS region transcription start site region 10638
Cpgi1181 1 186967290 to 186968435 1145 CpG island CpG island 1181
D1Pas1 1 186967416 to 186970627 3211 + protein coding gene DNA segment, Chr 1, Pasteur Institute 1
Tssr10639 1 186967639 to 186967646 7 + TSS region transcription start site region 10639
Tssr10640 1 186967667 to 186967690 23 + TSS region transcription start site region 10640
Gm19058 1 187006010 to 187006577 567 - pseudogene predicted gene, 19058
Spata17 1 187044648 to 187215465 170817 - protein coding gene spermatogenesis associated 17
Gm15508 1 187073011 to 187073335 324 - pseudogene predicted gene 15508
Tssr366 1 187078559 to 187078571 12 + TSS region transcription start site region 366
Gm43497 1 187081569 to 187083884 2315 - unclassified gene predicted gene 43497
Gm43496 1 187088160 to 187091160 3000 - unclassified gene predicted gene 43496
Gm15509 1 187120856 to 187122058 1202 - sense intronic lncRNA gene predicted gene 15509
Tssr10641 1 187125107 to 187125122 15 + TSS region transcription start site region 10641
Tssr10642 1 187125128 to 187125147 19 + TSS region transcription start site region 10642
1700007P06Rik 1 187125138 to 187127852 2714 + antisense lncRNA gene RIKEN cDNA 1700007P06 gene
Tssr15696 1 187143057 to 187143060 3 - TSS region transcription start site region 15696
Tssr15697 1 187143072 to 187143104 32 - TSS region transcription start site region 15697
Tssr15698 1 187199475 to 187199494 19 - TSS region transcription start site region 15698
Tssr15699 1 187199696 to 187199715 19 - TSS region transcription start site region 15699
Tssr15700 1 187215244 to 187215279 35 - TSS region transcription start site region 15700
Cpgi1182 1 187215370 to 187215946 576 CpG island CpG island 1182
Tssr15701 1 187215430 to 187215451 21 - TSS region transcription start site region 15701
Tssr15702 1 187215454 to 187215478 24 - TSS region transcription start site region 15702
Tssr15703 1 187215485 to 187215494 9 - TSS region transcription start site region 15703
Tssr10643 1 187215501 to 187215547 46 + TSS region transcription start site region 10643
Gpatch2 1 187215508 to 187351704 136196 + protein coding gene G patch domain containing 2
Tssr10644 1 187215548 to 187215559 11 + TSS region transcription start site region 10644
Tssr10645 1 187215714 to 187215728 14 + TSS region transcription start site region 10645
Tssr10646 1 187215737 to 187215748 11 + TSS region transcription start site region 10646
Gm37254 1 187236457 to 187240357 3900 + unclassified non-coding RNA gene predicted gene, 37254
D1Ertd75e 1 187260499 to 187260740 241 DNA segment DNA segment, Chr 1, ERATO Doi 75, expressed
Gm38155 1 187344970 to 187377469 32499 - antisense lncRNA gene predicted gene, 38155
Cpgi1183 1 187348413 to 187348660 247 CpG island CpG island 1183
Gm37896 1 187447877 to 187462664 14787 + lincRNA gene predicted gene, 37896
Gm36249 1 187486389 to 187492538 6149 - lncRNA gene predicted gene, 36249
Gm46176 1 187568366 to 187606051 37685 + lncRNA gene predicted gene, 46176
Cpgi1184 1 187604742 to 187604954 212 CpG island CpG island 1184
Cpgi1185 1 187605397 to 187605612 215 CpG island CpG island 1185
Cpgi1186 1 187607226 to 187608240 1014 CpG island CpG island 1186
Tssr10647 1 187607275 to 187607308 33 + TSS region transcription start site region 10647
Cpgi1187 1 187608668 to 187610193 1525 CpG island CpG island 1187
Tssr10648 1 187608755 to 187608764 9 + TSS region transcription start site region 10648
Esrrg 1 187608791 to 188214884 606093 + protein coding gene estrogen-related receptor gamma
Tssr10649 1 187608978 to 187608991 13 + TSS region transcription start site region 10649
Tssr10650 1 187609002 to 187609024 22 + TSS region transcription start site region 10650
Tssr10651 1 187609028 to 187609047 19 + TSS region transcription start site region 10651
Tssr10652 1 187609642 to 187609669 27 + TSS region transcription start site region 10652
Tssr10653 1 187616358 to 187616364 6 + TSS region transcription start site region 10653
Gm36388 1 187616852 to 187651824 34972 - antisense lncRNA gene predicted gene, 36388
Gm46175 1 187618775 to 187626938 8163 + protein coding gene predicted gene, 46175
Mors1 1 187647303 to 187647421 118 QTL modifier of obesity related sterility 1
D1Mit459 1 187647303 to 187647421 118 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 459
Tssr10654 1 187651511 to 187651534 23 + TSS region transcription start site region 10654
Cpgi1188 1 187651596 to 187652180 584 CpG island CpG island 1188
Tssr10655 1 187662119 to 187662131 12 + TSS region transcription start site region 10655
Tssr10656 1 187662333 to 187662371 38 + TSS region transcription start site region 10656
Tssr10657 1 187662376 to 187662384 8 + TSS region transcription start site region 10657
Tssr10658 1 187662474 to 187662485 11 + TSS region transcription start site region 10658
Tssr10659 1 187662487 to 187662508 21 + TSS region transcription start site region 10659
Gm37929 1 187662869 to 187663361 492 - unclassified gene predicted gene, 37929