Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:186390433-187530436

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nba10 1 152919071 to 186706423 33787352 QTL New Zealand Black autoimmunity 10
Gm35341 1 186407824 to 186420512 12688 + lncRNA gene predicted gene, 35341
Gm35426 1 186463840 to 186486460 22620 - lncRNA gene predicted gene, 35426
A730004F24Rik 1 186511838 to 186558681 46843 - lincRNA gene RIKEN cDNA A730004F24 gene
Tssr10624 1 186512106 to 186512108 2 + TSS region transcription start site region 10624
Tssr15677 1 186558504 to 186558521 17 - TSS region transcription start site region 15677
Gm35546 1 186587070 to 186614781 27711 + lncRNA gene predicted gene, 35546
Tssr10625 1 186587295 to 186587310 15 + TSS region transcription start site region 10625
Tssr10626 1 186587315 to 186587350 35 + TSS region transcription start site region 10626
Tssr10627 1 186587362 to 186587372 10 + TSS region transcription start site region 10627
Tssr10628 1 186587404 to 186587413 9 + TSS region transcription start site region 10628
Tssr10629 1 186587479 to 186587492 13 + TSS region transcription start site region 10629
Tssr10630 1 186587503 to 186587515 12 + TSS region transcription start site region 10630
Tgfb2 1 186622792 to 186705989 83197 - protein coding gene transforming growth factor, beta 2
Tssr15678 1 186623746 to 186623756 10 - TSS region transcription start site region 15678
Tssr15679 1 186624297 to 186624303 6 - TSS region transcription start site region 15679
Tssr15680 1 186625210 to 186625216 6 - TSS region transcription start site region 15680
Tssr15681 1 186634021 to 186634034 13 - TSS region transcription start site region 15681
Gm26169 1 186676742 to 186676876 134 + snoRNA gene predicted gene, 26169
Tssr15682 1 186689367 to 186689410 43 - TSS region transcription start site region 15682
Gm35655 1 186701980 to 186703803 1823 + lncRNA gene predicted gene, 35655
Cpgi1175 1 186704229 to 186704747 518 CpG island CpG island 1175
Tssr15683 1 186704511 to 186704583 72 - TSS region transcription start site region 15683
Tssr15684 1 186704956 to 186704964 8 - TSS region transcription start site region 15684
Tssr15685 1 186704993 to 186705023 30 - TSS region transcription start site region 15685
Tssr10631 1 186705013 to 186705022 9 + TSS region transcription start site region 10631
Cpgi1176 1 186705072 to 186706158 1086 CpG island CpG island 1176
Tssr15686 1 186705236 to 186705245 9 - TSS region transcription start site region 15686
Tssr15687 1 186705264 to 186705295 31 - TSS region transcription start site region 15687
Tssr15688 1 186705316 to 186705325 9 - TSS region transcription start site region 15688
Tssr15689 1 186705326 to 186705356 30 - TSS region transcription start site region 15689
Tssr15690 1 186705563 to 186705598 35 - TSS region transcription start site region 15690
Gm29491 1 186705695 to 186707033 1338 + antisense lncRNA gene predicted gene 29491
Tssr10632 1 186705894 to 186705919 25 + TSS region transcription start site region 10632
Tssr15691 1 186705980 to 186705999 19 - TSS region transcription start site region 15691
Tssr15692 1 186706048 to 186706060 12 - TSS region transcription start site region 15692
Tssr15693 1 186706061 to 186706097 36 - TSS region transcription start site region 15693
D1Mit461 1 186706303 to 186706423 120 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 461
Tssr10633 1 186709469 to 186709471 2 + TSS region transcription start site region 10633
Gm37849 1 186711218 to 186713098 1880 - unclassified gene predicted gene, 37849
Rrp15 1 186721086 to 186749358 28272 - protein coding gene ribosomal RNA processing 15 homolog (S. cerevisiae)
Cpgi1177 1 186748998 to 186749609 611 CpG island CpG island 1177
Tssr15694 1 186749284 to 186749293 9 - TSS region transcription start site region 15694
Tssr15695 1 186749304 to 186749340 36 - TSS region transcription start site region 15695
Tssr10634 1 186749368 to 186749415 47 + TSS region transcription start site region 10634
A430105J06Rik 1 186749396 to 186752921 3525 + lincRNA gene RIKEN cDNA A430105J06 gene
Cpgi1178 1 186833359 to 186833625 266 CpG island CpG island 1178
Cpgi1179 1 186833918 to 186834812 894 CpG island CpG island 1179
Cpgi1180 1 186858479 to 186858737 258 CpG island CpG island 1180
Gm39732 1 186917168 to 186942292 25124 - lncRNA gene predicted gene, 39732
Tssr10635 1 186926908 to 186926934 26 + TSS region transcription start site region 10635
1700023G09Rik 1 186926933 to 186930112 3179 + lincRNA gene RIKEN cDNA 1700023G09 gene
Gm39731 1 186941358 to 186945976 4618 + lncRNA gene predicted gene, 39731
Tssr10636 1 186960433 to 186960436 3 + TSS region transcription start site region 10636
Gm3809 1 186960508 to 186961513 1005 + pseudogene predicted gene 3809
Gm37912 1 186964528 to 186967603 3075 - antisense lncRNA gene predicted gene, 37912
Tssr10637 1 186967075 to 186967085 10 + TSS region transcription start site region 10637
Tssr10638 1 186967087 to 186967108 21 + TSS region transcription start site region 10638
Cpgi1181 1 186967290 to 186968435 1145 CpG island CpG island 1181
D1Pas1 1 186967416 to 186970627 3211 + protein coding gene DNA segment, Chr 1, Pasteur Institute 1
Tssr10639 1 186967639 to 186967646 7 + TSS region transcription start site region 10639
Tssr10640 1 186967667 to 186967690 23 + TSS region transcription start site region 10640
Gm19058 1 187006010 to 187006577 567 - pseudogene predicted gene, 19058
Spata17 1 187044648 to 187215465 170817 - protein coding gene spermatogenesis associated 17
Gm15508 1 187073011 to 187073335 324 - pseudogene predicted gene 15508
Tssr366 1 187078559 to 187078571 12 + TSS region transcription start site region 366
Gm43497 1 187081569 to 187083884 2315 - unclassified gene predicted gene 43497
Gm43496 1 187088160 to 187091160 3000 - unclassified gene predicted gene 43496
Gm15509 1 187120856 to 187122058 1202 - sense intronic lncRNA gene predicted gene 15509
Tssr10641 1 187125107 to 187125122 15 + TSS region transcription start site region 10641
Tssr10642 1 187125128 to 187125147 19 + TSS region transcription start site region 10642
1700007P06Rik 1 187125138 to 187127852 2714 + antisense lncRNA gene RIKEN cDNA 1700007P06 gene
Tssr15696 1 187143057 to 187143060 3 - TSS region transcription start site region 15696
Tssr15697 1 187143072 to 187143104 32 - TSS region transcription start site region 15697
Tssr15698 1 187199475 to 187199494 19 - TSS region transcription start site region 15698
Tssr15699 1 187199696 to 187199715 19 - TSS region transcription start site region 15699
Tssr15700 1 187215244 to 187215279 35 - TSS region transcription start site region 15700
Cpgi1182 1 187215370 to 187215946 576 CpG island CpG island 1182
Tssr15701 1 187215430 to 187215451 21 - TSS region transcription start site region 15701
Tssr15702 1 187215454 to 187215478 24 - TSS region transcription start site region 15702
Tssr15703 1 187215485 to 187215494 9 - TSS region transcription start site region 15703
Tssr10643 1 187215501 to 187215547 46 + TSS region transcription start site region 10643
Gpatch2 1 187215508 to 187351704 136196 + protein coding gene G patch domain containing 2
Tssr10644 1 187215548 to 187215559 11 + TSS region transcription start site region 10644
Tssr10645 1 187215714 to 187215728 14 + TSS region transcription start site region 10645
Tssr10646 1 187215737 to 187215748 11 + TSS region transcription start site region 10646
Gm37254 1 187236457 to 187240357 3900 + unclassified non-coding RNA gene predicted gene, 37254
D1Ertd75e 1 187260499 to 187260740 241 DNA segment DNA segment, Chr 1, ERATO Doi 75, expressed
Gm38155 1 187344970 to 187377469 32499 - antisense lncRNA gene predicted gene, 38155
Cpgi1183 1 187348413 to 187348660 247 CpG island CpG island 1183
Gm37896 1 187447877 to 187462664 14787 + lincRNA gene predicted gene, 37896
Gm36249 1 187486389 to 187492538 6149 - lncRNA gene predicted gene, 36249