Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:185112593-190636420

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392 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hbnr4 1 147249520 to 189251027 42001507 QTL Heligmosomoides bakeri nematode resistance 4
Lgq4 1 150317922 to 188627115 38309193 QTL late growth QTL 4
Splq5 1 150317922 to 188627115 38309193 QTL spleen weight QTL 5
Lgaq3 1 150317922 to 188627115 38309193 QTL late growth adjusted QTL 3
Nba10 1 152919071 to 186706423 33787352 QTL New Zealand Black autoimmunity 10
Shali5 1 155706491 to 186261999 30555508 QTL survival time to hyperoxic acute lung injury 5
Bmd1 1 156774467 to 189571420 32796953 QTL bone mineral density 1
Lmr8 1 156774467 to 189571420 32796953 QTL leishmaniasis resistance 8
Emo1 1 163149528 to 186261999 23112471 QTL emotionality 1
Mop3 1 167929168 to 189571420 21642252 QTL morphine preference 3
Scfr1 1 171804480 to 189571420 17766940 QTL stem cell frequency regulator 1
Gm34797 1 185098819 to 185118365 19546 - lncRNA gene predicted gene, 34797
Cpgi1168 1 185193114 to 185193296 182 CpG island CpG island 1168
Cpgi1169 1 185203548 to 185204578 1030 CpG island CpG island 1169
Tssr15668 1 185203739 to 185203743 4 - TSS region transcription start site region 15668
Tssr15669 1 185203818 to 185203838 20 - TSS region transcription start site region 15669
Tssr10591 1 185204109 to 185204163 54 + TSS region transcription start site region 10591
Rab3gap2 1 185204117 to 185286759 82642 + protein coding gene RAB3 GTPase activating protein subunit 2
Tssr10592 1 185204165 to 185204183 18 + TSS region transcription start site region 10592
Tssr10593 1 185204232 to 185204243 11 + TSS region transcription start site region 10593
Tssr10594 1 185205928 to 185205937 9 + TSS region transcription start site region 10594
Tssr10595 1 185210706 to 185210732 26 + TSS region transcription start site region 10595
D1Mit221 1 185222387 to 185222504 117 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 221
Skmw6 1 185222387 to 185222504 117 QTL skeletal muscle weight 6
Snora36b 1 185242926 to 185243038 112 + snoRNA gene small nucleolar RNA, H/ACA box 36B
Mir664 1 185242975 to 185243043 68 + miRNA gene microRNA 664
Gm34882 1 185243709 to 185247884 4175 - antisense lncRNA gene predicted gene, 34882
Tssr10596 1 185247956 to 185247988 32 + TSS region transcription start site region 10596
Tssr10597 1 185252721 to 185252756 35 + TSS region transcription start site region 10597
Tssr10598 1 185270986 to 185271006 20 + TSS region transcription start site region 10598
Tssr10599 1 185283057 to 185283070 13 + TSS region transcription start site region 10599
Tssr363 1 185283125 to 185283152 27 + TSS region transcription start site region 363
Tssr364 1 185283291 to 185283293 2 + TSS region transcription start site region 364
Iars2 1 185286662 to 185329416 42754 - protein coding gene isoleucine-tRNA synthetase 2, mitochondrial
Tssr10600 1 185312185 to 185312200 15 + TSS region transcription start site region 10600
2010103J01Rik 1 185312187 to 185313803 1616 + antisense lncRNA gene RIKEN cDNA 2010103J01 gene
Mir194-1 1 185313319 to 185313385 66 + miRNA gene microRNA 194-1
Mirc38 1 185313319 to 185313692 373 complex/cluster/region microRNA cluster 38, including Mir194-1 through Mir215
Mir215 1 185313581 to 185313692 111 + miRNA gene microRNA 215
Tssr10601 1 185313670 to 185313674 4 + TSS region transcription start site region 10601
Cpgi1170 1 185328598 to 185329617 1019 CpG island CpG island 1170
Tssr15670 1 185329331 to 185329401 70 - TSS region transcription start site region 15670
Gm37785 1 185329451 to 185331858 2407 + unclassified gene predicted gene, 37785
Cpgi1171 1 185331899 to 185332404 505 CpG island CpG island 1171
Tssr10602 1 185332143 to 185332216 73 + TSS region transcription start site region 10602
Bpnt1 1 185332149 to 185357777 25628 + protein coding gene bisphosphate 3'-nucleotidase 1
Tssr10603 1 185356628 to 185356640 12 + TSS region transcription start site region 10603
Tssr10604 1 185356643 to 185356659 16 + TSS region transcription start site region 10604
Tssr10605 1 185357035 to 185357045 10 + TSS region transcription start site region 10605
4930532G15Rik 1 185359461 to 185362865 3404 - lincRNA gene RIKEN cDNA 4930532G15 gene
Cpgi1172 1 185362642 to 185363839 1197 CpG island CpG island 1172
Tssr10606 1 185363025 to 185363026 1 + TSS region transcription start site region 10606
Tssr10607 1 185363035 to 185363064 29 + TSS region transcription start site region 10607
Eprs 1 185363044 to 185428360 65316 + protein coding gene glutamyl-prolyl-tRNA synthetase
Tssr10608 1 185363076 to 185363150 74 + TSS region transcription start site region 10608
Tssr10609 1 185411495 to 185411502 7 + TSS region transcription start site region 10609
Tssr10610 1 185418271 to 185418294 23 + TSS region transcription start site region 10610
9630028B13Rik 1 185429357 to 185441819 12462 - antisense lncRNA gene RIKEN cDNA 9630028B13 gene
Tssr10611 1 185431916 to 185431929 13 + TSS region transcription start site region 10611
Tssr10612 1 185431931 to 185431946 15 + TSS region transcription start site region 10612
Tssr10613 1 185431948 to 185431960 12 + TSS region transcription start site region 10613
Tssr10614 1 185431961 to 185431979 18 + TSS region transcription start site region 10614
Tssr15671 1 185441715 to 185441735 20 - TSS region transcription start site region 15671
Tssr15672 1 185441741 to 185441761 20 - TSS region transcription start site region 15672
Gm2061 1 185447116 to 185455568 8452 - lincRNA gene predicted gene 2061
Tssr15673 1 185451601 to 185451620 19 - TSS region transcription start site region 15673
Tssr15674 1 185451622 to 185451656 34 - TSS region transcription start site region 15674
Cpgi1173 1 185454713 to 185455754 1041 CpG island CpG island 1173
Tssr10615 1 185454775 to 185454800 25 + TSS region transcription start site region 10615
Tssr10616 1 185454803 to 185454817 14 + TSS region transcription start site region 10616
Slc30a10 1 185454848 to 185468762 13914 + protein coding gene solute carrier family 30, member 10
Tssr10617 1 185454913 to 185454931 18 + TSS region transcription start site region 10617
Tssr10618 1 185454980 to 185454995 15 + TSS region transcription start site region 10618
Tssr10619 1 185455052 to 185455088 36 + TSS region transcription start site region 10619
D1Mit208 1 185481626 to 185481760 134 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 208
Scc3 1 185481626 to 185481760 134 QTL colon tumor susceptibility 3
Gm34969 1 185487269 to 185502904 15635 + lncRNA gene predicted gene, 34969
Tssr10620 1 185487288 to 185487299 11 + TSS region transcription start site region 10620
Tssr10621 1 185487328 to 185487344 16 + TSS region transcription start site region 10621
5033404E19Rik 1 185497306 to 185498014 708 + pseudogene RIKEN cDNA 5033404E19 gene
Tssr10622 1 185534380 to 185534413 33 + TSS region transcription start site region 10622
Gm35023 1 185618605 to 185644334 25729 + lncRNA gene predicted gene, 35023
Gm38093 1 185744803 to 185757772 12969 + lincRNA gene predicted gene, 38093
Gm9722 1 185878084 to 185878885 801 - pseudogene predicted gene 9722
Tssr365 1 185969950 to 185969957 7 + TSS region transcription start site region 365
Gm39729 1 186031078 to 186034344 3266 - lncRNA gene predicted gene, 39729
Lyplal1 1 186087732 to 186117310 29578 - protein coding gene lysophospholipase-like 1
Gm38268 1 186112181 to 186112373 192 - unclassified gene predicted gene, 38268
Cpgi1174 1 186116889 to 186117447 558 CpG island CpG island 1174
Tssr15675 1 186117251 to 186117294 43 - TSS region transcription start site region 15675
Gm23821 1 186123201 to 186123306 105 + rRNA gene predicted gene, 23821
Gm35201 1 186137851 to 186154619 16768 + lncRNA gene predicted gene, 35201
Tssr10623 1 186137939 to 186137971 32 + TSS region transcription start site region 10623
Gm37134 1 186177338 to 186223789 46451 + lincRNA gene predicted gene, 37134
D1Mit407 1 186177593 to 186177711 118 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 407
Bmd1c 1 186177593 to 189571420 3393827 QTL bone mineral density 1c
Gm37272 1 186182257 to 186182744 487 + unclassified gene predicted gene, 37272
D1Mit361 1 186261829 to 186261999 170 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 361
D1Mit361.3 1 186262012 to 186262127 115 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 361.3
Tssr15676 1 186309313 to 186309314 1 - TSS region transcription start site region 15676
Gm37491 1 186347315 to 186348425 1110 + unclassified gene predicted gene, 37491
Gm35341 1 186407824 to 186420512 12688 + lncRNA gene predicted gene, 35341
Gm35426 1 186463840 to 186486460 22620 - lncRNA gene predicted gene, 35426
A730004F24Rik 1 186511838 to 186558681 46843 - lincRNA gene RIKEN cDNA A730004F24 gene
Tssr10624 1 186512106 to 186512108 2 + TSS region transcription start site region 10624
Tssr15677 1 186558504 to 186558521 17 - TSS region transcription start site region 15677
Gm35546 1 186587070 to 186614781 27711 + lncRNA gene predicted gene, 35546
Tssr10625 1 186587295 to 186587310 15 + TSS region transcription start site region 10625
Tssr10626 1 186587315 to 186587350 35 + TSS region transcription start site region 10626
Tssr10627 1 186587362 to 186587372 10 + TSS region transcription start site region 10627
Tssr10628 1 186587404 to 186587413 9 + TSS region transcription start site region 10628
Tssr10629 1 186587479 to 186587492 13 + TSS region transcription start site region 10629
Tssr10630 1 186587503 to 186587515 12 + TSS region transcription start site region 10630
Tgfb2 1 186622792 to 186705989 83197 - protein coding gene transforming growth factor, beta 2
Tssr15678 1 186623746 to 186623756 10 - TSS region transcription start site region 15678
Tssr15679 1 186624297 to 186624303 6 - TSS region transcription start site region 15679
Tssr15680 1 186625210 to 186625216 6 - TSS region transcription start site region 15680
Tssr15681 1 186634021 to 186634034 13 - TSS region transcription start site region 15681
Gm26169 1 186676742 to 186676876 134 + snoRNA gene predicted gene, 26169
Tssr15682 1 186689367 to 186689410 43 - TSS region transcription start site region 15682
Gm35655 1 186701980 to 186703803 1823 + lncRNA gene predicted gene, 35655
Cpgi1175 1 186704229 to 186704747 518 CpG island CpG island 1175
Tssr15683 1 186704511 to 186704583 72 - TSS region transcription start site region 15683
Tssr15684 1 186704956 to 186704964 8 - TSS region transcription start site region 15684
Tssr15685 1 186704993 to 186705023 30 - TSS region transcription start site region 15685
Tssr10631 1 186705013 to 186705022 9 + TSS region transcription start site region 10631
Cpgi1176 1 186705072 to 186706158 1086 CpG island CpG island 1176
Tssr15686 1 186705236 to 186705245 9 - TSS region transcription start site region 15686
Tssr15687 1 186705264 to 186705295 31 - TSS region transcription start site region 15687
Tssr15688 1 186705316 to 186705325 9 - TSS region transcription start site region 15688
Tssr15689 1 186705326 to 186705356 30 - TSS region transcription start site region 15689
Tssr15690 1 186705563 to 186705598 35 - TSS region transcription start site region 15690
Gm29491 1 186705695 to 186707033 1338 + antisense lncRNA gene predicted gene 29491
Tssr10632 1 186705894 to 186705919 25 + TSS region transcription start site region 10632
Tssr15691 1 186705980 to 186705999 19 - TSS region transcription start site region 15691
Tssr15692 1 186706048 to 186706060 12 - TSS region transcription start site region 15692
Tssr15693 1 186706061 to 186706097 36 - TSS region transcription start site region 15693
D1Mit461 1 186706303 to 186706423 120 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 461
Tssr10633 1 186709469 to 186709471 2 + TSS region transcription start site region 10633
Gm37849 1 186711218 to 186713098 1880 - unclassified gene predicted gene, 37849
Rrp15 1 186721086 to 186749358 28272 - protein coding gene ribosomal RNA processing 15 homolog (S. cerevisiae)
Cpgi1177 1 186748998 to 186749609 611 CpG island CpG island 1177
Tssr15694 1 186749284 to 186749293 9 - TSS region transcription start site region 15694
Tssr15695 1 186749304 to 186749340 36 - TSS region transcription start site region 15695
Tssr10634 1 186749368 to 186749415 47 + TSS region transcription start site region 10634
A430105J06Rik 1 186749396 to 186752921 3525 + lincRNA gene RIKEN cDNA A430105J06 gene
Cpgi1178 1 186833359 to 186833625 266 CpG island CpG island 1178
Cpgi1179 1 186833918 to 186834812 894 CpG island CpG island 1179
Cpgi1180 1 186858479 to 186858737 258 CpG island CpG island 1180
Gm39732 1 186917168 to 186942292 25124 - lncRNA gene predicted gene, 39732
Tssr10635 1 186926908 to 186926934 26 + TSS region transcription start site region 10635
1700023G09Rik 1 186926933 to 186930112 3179 + lincRNA gene RIKEN cDNA 1700023G09 gene
Gm39731 1 186941358 to 186945976 4618 + lncRNA gene predicted gene, 39731
Tssr10636 1 186960433 to 186960436 3 + TSS region transcription start site region 10636
Gm3809 1 186960508 to 186961513 1005 + pseudogene predicted gene 3809
Gm37912 1 186964528 to 186967603 3075 - antisense lncRNA gene predicted gene, 37912
Tssr10637 1 186967075 to 186967085 10 + TSS region transcription start site region 10637
Tssr10638 1 186967087 to 186967108 21 + TSS region transcription start site region 10638
Cpgi1181 1 186967290 to 186968435 1145 CpG island CpG island 1181
D1Pas1 1 186967416 to 186970627 3211 + protein coding gene DNA segment, Chr 1, Pasteur Institute 1
Tssr10639 1 186967639 to 186967646 7 + TSS region transcription start site region 10639
Tssr10640 1 186967667 to 186967690 23 + TSS region transcription start site region 10640
Gm19058 1 187006010 to 187006577 567 - pseudogene predicted gene, 19058
Spata17 1 187044648 to 187215465 170817 - protein coding gene spermatogenesis associated 17
Gm15508 1 187073011 to 187073335 324 - pseudogene predicted gene 15508
Tssr366 1 187078559 to 187078571 12 + TSS region transcription start site region 366
Gm43497 1 187081569 to 187083884 2315 - unclassified gene predicted gene 43497
Gm43496 1 187088160 to 187091160 3000 - unclassified gene predicted gene 43496
Gm15509 1 187120856 to 187122058 1202 - sense intronic lncRNA gene predicted gene 15509
Tssr10641 1 187125107 to 187125122 15 + TSS region transcription start site region 10641
Tssr10642 1 187125128 to 187125147 19 + TSS region transcription start site region 10642
1700007P06Rik 1 187125138 to 187127852 2714 + antisense lncRNA gene RIKEN cDNA 1700007P06 gene
Tssr15696 1 187143057 to 187143060 3 - TSS region transcription start site region 15696
Tssr15697 1 187143072 to 187143104 32 - TSS region transcription start site region 15697
Tssr15698 1 187199475 to 187199494 19 - TSS region transcription start site region 15698
Tssr15699 1 187199696 to 187199715 19 - TSS region transcription start site region 15699
Tssr15700 1 187215244 to 187215279 35 - TSS region transcription start site region 15700
Cpgi1182 1 187215370 to 187215946 576 CpG island CpG island 1182
Tssr15701 1 187215430 to 187215451 21 - TSS region transcription start site region 15701
Tssr15702 1 187215454 to 187215478 24 - TSS region transcription start site region 15702
Tssr15703 1 187215485 to 187215494 9 - TSS region transcription start site region 15703
Tssr10643 1 187215501 to 187215547 46 + TSS region transcription start site region 10643
Gpatch2 1 187215508 to 187351704 136196 + protein coding gene G patch domain containing 2
Tssr10644 1 187215548 to 187215559 11 + TSS region transcription start site region 10644
Tssr10645 1 187215714 to 187215728 14 + TSS region transcription start site region 10645
Tssr10646 1 187215737 to 187215748 11 + TSS region transcription start site region 10646
Gm37254 1 187236457 to 187240357 3900 + unclassified non-coding RNA gene predicted gene, 37254
D1Ertd75e 1 187260499 to 187260740 241 DNA segment DNA segment, Chr 1, ERATO Doi 75, expressed
Gm38155 1 187344970 to 187377469 32499 - antisense lncRNA gene predicted gene, 38155
Cpgi1183 1 187348413 to 187348660 247 CpG island CpG island 1183
Gm37896 1 187447877 to 187462664 14787 + lincRNA gene predicted gene, 37896
Gm36249 1 187486389 to 187492538 6149 - lncRNA gene predicted gene, 36249
Gm46176 1 187568366 to 187606051 37685 + lncRNA gene predicted gene, 46176
Cpgi1184 1 187604742 to 187604954 212 CpG island CpG island 1184
Cpgi1185 1 187605397 to 187605612 215 CpG island CpG island 1185
Cpgi1186 1 187607226 to 187608240 1014 CpG island CpG island 1186
Tssr10647 1 187607275 to 187607308 33 + TSS region transcription start site region 10647
Cpgi1187 1 187608668 to 187610193 1525 CpG island CpG island 1187
Tssr10648 1 187608755 to 187608764 9 + TSS region transcription start site region 10648
Esrrg 1 187608791 to 188214884 606093 + protein coding gene estrogen-related receptor gamma