Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:171388105-171528119

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50 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nectin4 1 171370173 to 171388287 18114 + protein coding gene nectin cell adhesion molecule 4
Tssr15042 1 171388754 to 171388763 9 - TSS region transcription start site region 15042
Tssr15043 1 171388772 to 171388798 26 - TSS region transcription start site region 15043
Tssr10032 1 171388920 to 171388935 15 + TSS region transcription start site region 10032
Tssr10033 1 171388955 to 171389042 87 + TSS region transcription start site region 10033
Arhgap30 1 171388960 to 171410240 21280 + protein coding gene Rho GTPase activating protein 30
Tssr10034 1 171389068 to 171389099 31 + TSS region transcription start site region 10034
Tssr10035 1 171389100 to 171389115 15 + TSS region transcription start site region 10035
Tssr10036 1 171389130 to 171389137 7 + TSS region transcription start site region 10036
Tssr10037 1 171389146 to 171389157 11 + TSS region transcription start site region 10037
Tssr10038 1 171389181 to 171389197 16 + TSS region transcription start site region 10038
Tssr10039 1 171389211 to 171389233 22 + TSS region transcription start site region 10039
Tssr10040 1 171389240 to 171389247 7 + TSS region transcription start site region 10040
Tssr15044 1 171390178 to 171390205 27 - TSS region transcription start site region 15044
Tssr10041 1 171403197 to 171403246 49 + TSS region transcription start site region 10041
Tssr10042 1 171407902 to 171407911 9 + TSS region transcription start site region 10042
Tssr10043 1 171408017 to 171408034 17 + TSS region transcription start site region 10043
Tssr10044 1 171408113 to 171408133 20 + TSS region transcription start site region 10044
Tssr10045 1 171408160 to 171408178 18 + TSS region transcription start site region 10045
Tssr10046 1 171408179 to 171408197 18 + TSS region transcription start site region 10046
Tssr10047 1 171408210 to 171408222 12 + TSS region transcription start site region 10047
Tssr10048 1 171409615 to 171409625 10 + TSS region transcription start site region 10048
Cpgi1027 1 171411166 to 171412357 1191 CpG island CpG island 1027
Tssr10049 1 171411305 to 171411337 32 + TSS region transcription start site region 10049
Usf1 1 171411313 to 171418759 7446 + protein coding gene upstream transcription factor 1
Tssr10050 1 171411343 to 171411382 39 + TSS region transcription start site region 10050
Tssr10051 1 171418964 to 171418969 5 + TSS region transcription start site region 10051
Tssr10052 1 171419027 to 171419052 25 + TSS region transcription start site region 10052
Tstd1 1 171419033 to 171420352 1319 + protein coding gene thiosulfate sulfurtransferase (rhodanese)-like domain containing 1
Tssr10053 1 171419060 to 171419092 32 + TSS region transcription start site region 10053
Tssr289 1 171419094 to 171419099 5 + TSS region transcription start site region 289
Gm26641 1 171423185 to 171437318 14133 - lincRNA gene predicted gene, 26641
Tssr15045 1 171437288 to 171437323 35 - TSS region transcription start site region 15045
Cpgi1028 1 171437340 to 171438146 806 CpG island CpG island 1028
Tssr10054 1 171437552 to 171437566 14 + TSS region transcription start site region 10054
F11r 1 171437561 to 171464593 27032 + protein coding gene F11 receptor
Tssr10055 1 171437568 to 171437584 16 + TSS region transcription start site region 10055
Tssr10056 1 171437594 to 171437605 11 + TSS region transcription start site region 10056
Tssr290 1 171439316 to 171439321 5 + TSS region transcription start site region 290
Tssr10057 1 171458105 to 171458119 14 + TSS region transcription start site region 10057
Tssr10058 1 171458333 to 171458359 26 + TSS region transcription start site region 10058
Tssr10059 1 171466009 to 171466016 7 + TSS region transcription start site region 10059
B930036N10Rik 1 171500568 to 171504111 3543 - antisense lncRNA gene RIKEN cDNA B930036N10 gene
Gm24871 1 171503048 to 171503163 115 - snRNA gene predicted gene, 24871
Cpgi1029 1 171503323 to 171504355 1032 CpG island CpG island 1029
Tssr10060 1 171503410 to 171503456 46 + TSS region transcription start site region 10060
Alyref2 1 171503478 to 171504750 1272 + protein coding gene Aly/REF export factor 2
Tssr10061 1 171503625 to 171503649 24 + TSS region transcription start site region 10061
Gm9765 1 171515233 to 171516922 1689 + pseudogene predicted gene 9765
Itln1 1 171518122 to 171535294 17172 - protein coding gene intelectin 1 (galactofuranose binding)