Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:168987542-171958066

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730 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scgq2 1 147249520 to 171804689 24555169 QTL spontaneous crescentic glomerulonephritis QTL 2
Nidd3k 1 147249520 to 169211344 21961824 QTL Nidd3 on KK-A
Leusq4 1 156774467 to 170976071 14201604 QTL leucocytosis susceptibility QTL 4
Cfcd 1 168000922 to 169211344 1210422 QTL contextual fear conditioning
Sle1a 1 168358674 to 170239759 1881085 QTL systematic lupus erythematosus susceptibility 1a
Nktcn1 1 168358674 to 171804689 3446015 QTL natural killer T cell numbers 1
D1Mit111 1 169007542 to 169007711 169 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 111
Nba2 1 169007542 to 169007711 169 QTL New Zealand Black autoimmunity 2
Bmd5b 1 169007542 to 171938066 2930524 QTL bone mineral density 5b
Mir6354 1 169018974 to 169019089 115 - miRNA gene microRNA 6354
Tssr14888 1 169046869 to 169046878 9 - TSS region transcription start site region 14888
Tssr14889 1 169046891 to 169046896 5 - TSS region transcription start site region 14889
Tssr14890 1 169087599 to 169087601 2 - TSS region transcription start site region 14890
Gm39697 1 169128222 to 169172873 44651 - lncRNA gene predicted gene, 39697
Sle1 1 169211172 to 169211344 172 QTL systemic lupus erythmatosus susceptibility 1
Sle16 1 169211172 to 177550021 8338849 QTL systematic lupus erythematosus susceptibility 16
Cgnz1 1 169211172 to 169211344 172 QTL chronic glomerulonephritis in NZM 1
Cfmq1 1 169211172 to 169211344 172 QTL cystic fibrosis modifier QTL 1
Lprq3 1 169211172 to 169211344 172 QTL lipoprotein QTL 3
Bbaa30 1 169211172 to 174628870 5417698 QTL B.burgdorferi-associated arthritis 30
Lbw7 1 169211172 to 169211344 172 QTL lupus NZB x NZW 7
D1Mit36 1 169211172 to 169211344 172 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 36
D1Mit402 1 169251917 to 169252020 103 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 402
Gm34421 1 169254610 to 169260876 6266 + lncRNA gene predicted gene, 34421
Hdlq107 1 169305175 to 169305175 0 QTL HDL QTL 107
Ewc1 1 169305175 to 169305175 0 QTL ethanol withdrawal and consumption 1
Tcq11 1 169310000 to 179820000 10510000 QTL total cholesterol QTL 11
Gm37839 1 169328529 to 169347632 19103 - lincRNA gene predicted gene, 37839
Gm34477 1 169364509 to 169370283 5774 + lncRNA gene predicted gene, 34477
Gm5265 1 169453528 to 169453869 341 - pseudogene predicted pseudogene 5265
Gm34535 1 169462966 to 169470755 7789 + lncRNA gene predicted gene, 34535
Nuf2 1 169497934 to 169531464 33530 - protein coding gene NUF2, NDC80 kinetochore complex component
Cpgi989 1 169531199 to 169531707 508 CpG island CpG island 989
Tssr14891 1 169531343 to 169531437 94 - TSS region transcription start site region 14891
Tssr14892 1 169531447 to 169531460 13 - TSS region transcription start site region 14892
Gm34624 1 169531526 to 169542467 10941 + lncRNA gene predicted gene, 34624
Gm18900 1 169591549 to 169592132 583 - pseudogene predicted gene, 18900
Gm36980 1 169595784 to 169596939 1155 - pseudogene predicted gene, 36980
Tssr9914 1 169655493 to 169655508 15 + TSS region transcription start site region 9914
Rgs5 1 169655501 to 169695813 40312 + protein coding gene regulator of G-protein signaling 5
Tssr9915 1 169692573 to 169692578 5 + TSS region transcription start site region 9915
Tssr9916 1 169693666 to 169693695 29 + TSS region transcription start site region 9916
Tssr9917 1 169693827 to 169693847 20 + TSS region transcription start site region 9917
Tssr276 1 169694030 to 169694055 25 + TSS region transcription start site region 276
Rgs4 1 169741477 to 169747642 6165 - protein coding gene regulator of G-protein signaling 4
Tssr14893 1 169747634 to 169747649 15 - TSS region transcription start site region 14893
Gm39698 1 169748473 to 169756950 8477 - lncRNA gene predicted gene, 39698
Gm22114 1 169799450 to 169799556 106 - snRNA gene predicted gene, 22114
D1Mit524 1 169843673 to 169843787 114 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-524
Gm37586 1 169853548 to 169853751 203 + pseudogene predicted gene, 37586
Gm39699 1 169926029 to 169928588 2559 + lncRNA gene predicted gene, 39699
Ccdc190 1 169928648 to 169934653 6005 + protein coding gene coiled-coil domain containing 190
Tssr9918 1 169928807 to 169928815 8 + TSS region transcription start site region 9918
Tssr277 1 169930094 to 169930136 42 + TSS region transcription start site region 277
Gm15852 1 169932698 to 169934248 1550 - unclassified non-coding RNA gene predicted gene 15852
Hsd17b7 1 169949535 to 169969240 19705 - protein coding gene hydroxysteroid (17-beta) dehydrogenase 7
Cpgi990 1 169968826 to 169969462 636 CpG island CpG island 990
Tssr14894 1 169969143 to 169969218 75 - TSS region transcription start site region 14894
3110045C21Rik 1 169969409 to 169972396 2987 + antisense lncRNA gene RIKEN cDNA 3110045C21 gene
Tssr9919 1 169969428 to 169969454 26 + TSS region transcription start site region 9919
Tssr9920 1 169969765 to 169969773 8 + TSS region transcription start site region 9920
Ddr2 1 169972307 to 170110762 138455 - protein coding gene discoidin domain receptor family, member 2
Tssr14895 1 169974989 to 169975003 14 - TSS region transcription start site region 14895
Tssr14896 1 169975025 to 169975038 13 - TSS region transcription start site region 14896
Tssr278 1 170016244 to 170016246 2 + TSS region transcription start site region 278
Tssr14897 1 170110315 to 170110332 17 - TSS region transcription start site region 14897
Tssr14898 1 170110425 to 170110440 15 - TSS region transcription start site region 14898
Tssr14899 1 170110441 to 170110480 39 - TSS region transcription start site region 14899
Tssr14900 1 170110491 to 170110532 41 - TSS region transcription start site region 14900
Tssr14901 1 170110723 to 170110729 6 - TSS region transcription start site region 14901
Tssr14902 1 170110744 to 170110823 79 - TSS region transcription start site region 14902
Tssr14903 1 170110829 to 170110834 5 - TSS region transcription start site region 14903
Tssr279 1 170111070 to 170111086 16 - TSS region transcription start site region 279
Tssr14904 1 170111177 to 170111214 37 - TSS region transcription start site region 14904
Tssr14905 1 170111416 to 170111427 11 - TSS region transcription start site region 14905
Uap1 1 170141938 to 170174957 33019 - protein coding gene UDP-N-acetylglucosamine pyrophosphorylase 1
Cpgi991 1 170174277 to 170175586 1309 CpG island CpG island 991
Tssr14906 1 170174781 to 170174796 15 - TSS region transcription start site region 14906
Tssr14907 1 170174816 to 170174827 11 - TSS region transcription start site region 14907
Tssr14908 1 170174884 to 170174899 15 - TSS region transcription start site region 14908
Tssr14909 1 170174900 to 170174951 51 - TSS region transcription start site region 14909
Tssr14910 1 170174959 to 170175001 42 - TSS region transcription start site region 14910
Gm37748 1 170175180 to 170176319 1139 + lincRNA gene predicted gene, 37748
Gm37502 1 170175382 to 170177772 2390 - lincRNA gene predicted gene, 37502
Tssr14911 1 170198767 to 170198791 24 - TSS region transcription start site region 14911
Uhmk1 1 170199256 to 170215435 16179 - protein coding gene U2AF homology motif (UHM) kinase 1
Tssr14912 1 170211743 to 170211746 3 - TSS region transcription start site region 14912
Tssr14913 1 170211768 to 170211775 7 - TSS region transcription start site region 14913
Tssr14914 1 170211779 to 170211785 6 - TSS region transcription start site region 14914
Cpgi992 1 170214730 to 170215479 749 CpG island CpG island 992
Tssr9921 1 170214826 to 170214863 37 + TSS region transcription start site region 9921
4930500M09Rik 1 170214860 to 170216422 1562 + antisense lncRNA gene RIKEN cDNA 4930500M09 gene
Tssr14915 1 170215380 to 170215420 40 - TSS region transcription start site region 14915
Sh2d1b2 1 170232871 to 170251587 18716 + protein coding gene SH2 domain containing 1B2
D1Mit353 1 170239646 to 170239759 113 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 353
D1Mit508 1 170239666 to 170239913 247 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 508
Gm6345 1 170254049 to 170255739 1690 - pseudogene predicted gene 6345
Cpgi993 1 170255066 to 170255838 772 CpG island CpG island 993
Tssr14916 1 170255721 to 170255761 40 - TSS region transcription start site region 14916
Sh2d1b1 1 170277324 to 170285662 8338 + protein coding gene SH2 domain containing 1B1
Gm7694 1 170298199 to 170306332 8133 - protein coding gene predicted gene 7694
Tssr9922 1 170308802 to 170308828 26 + TSS region transcription start site region 9922
Tssr9923 1 170308836 to 170308884 48 + TSS region transcription start site region 9923
Spata46 1 170308861 to 170312125 3264 + protein coding gene spermatogenesis associated 46
Tssr9924 1 170308890 to 170308893 3 + TSS region transcription start site region 9924
Tssr9925 1 170309333 to 170309343 10 + TSS region transcription start site region 9925
Tssr14917 1 170312996 to 170312999 3 - TSS region transcription start site region 14917
Nos1ap 1 170314700 to 170589849 275149 - protein coding gene nitric oxide synthase 1 (neuronal) adaptor protein
D1Mit205 1 170413869 to 170414015 146 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 205
D1Mit455 1 170413888 to 170414012 124 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 455
Tssr14918 1 170434262 to 170434291 29 - TSS region transcription start site region 14918
D1Mit473 1 170446470 to 170446608 138 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-473
Gm46171 1 170533084 to 170540809 7725 - lncRNA gene predicted gene, 46171
Tssr14919 1 170540814 to 170540818 4 - TSS region transcription start site region 14919
Cpgi994 1 170589011 to 170590273 1262 CpG island CpG island 994
Tssr14920 1 170589751 to 170589769 18 - TSS region transcription start site region 14920
Tssr14921 1 170589791 to 170589854 63 - TSS region transcription start site region 14921
Tssr9926 1 170630909 to 170630911 2 + TSS region transcription start site region 9926
Gm7299 1 170630921 to 170631501 580 + pseudogene predicted gene 7299
Tssr9927 1 170642840 to 170642851 11 + TSS region transcription start site region 9927
Cpgi995 1 170644170 to 170644885 715 CpG island CpG island 995
Tssr14922 1 170644328 to 170644340 12 - TSS region transcription start site region 14922
Tssr280 1 170644344 to 170644351 7 - TSS region transcription start site region 280
Tssr14923 1 170644379 to 170644392 13 - TSS region transcription start site region 14923
Tssr9928 1 170644449 to 170644458 9 + TSS region transcription start site region 9928
Tssr9929 1 170644490 to 170644514 24 + TSS region transcription start site region 9929
Tssr9930 1 170644523 to 170644570 47 + TSS region transcription start site region 9930
Olfml2b 1 170644532 to 170682789 38257 + protein coding gene olfactomedin-like 2B
Tssr9931 1 170644572 to 170644586 14 + TSS region transcription start site region 9931
Tssr9932 1 170644589 to 170644602 13 + TSS region transcription start site region 9932
Tssr9933 1 170644785 to 170644837 52 + TSS region transcription start site region 9933
Tssr281 1 170689997 to 170690025 28 + TSS region transcription start site region 281
Atf6 1 170704674 to 170867771 163097 - protein coding gene activating transcription factor 6
Tssr282 1 170707727 to 170707730 3 + TSS region transcription start site region 282
Tssr283 1 170709794 to 170709805 11 + TSS region transcription start site region 283
Gm23523 1 170751717 to 170751823 106 - snRNA gene predicted gene, 23523
Tssr14924 1 170761839 to 170761840 1 - TSS region transcription start site region 14924
Cpgi996 1 170771627 to 170771785 158 CpG island CpG island 996
Tssr14925 1 170788653 to 170788694 41 - TSS region transcription start site region 14925
Tssr14926 1 170824817 to 170824820 3 - TSS region transcription start site region 14926
Gm25235 1 170832765 to 170832871 106 - snRNA gene predicted gene, 25235
Tssr14927 1 170841771 to 170841790 19 - TSS region transcription start site region 14927
Tssr14928 1 170845787 to 170845800 13 - TSS region transcription start site region 14928
Nhdlt1 1 170848421 to 170848536 115 QTL non-HDL cholesterol and triglyceride levels 1
D1Mit270 1 170848421 to 170848536 115 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 270
Gm29733 1 170850526 to 170851536 1010 - protein coding gene predicted gene, 29733
Tssr14929 1 170857453 to 170857463 10 - TSS region transcription start site region 14929
Tssr14930 1 170857494 to 170857513 19 - TSS region transcription start site region 14930
Cpgi997 1 170867210 to 170867958 748 CpG island CpG island 997
Tssr14931 1 170867733 to 170867742 9 - TSS region transcription start site region 14931
Tssr14932 1 170867745 to 170867756 11 - TSS region transcription start site region 14932
Tssr14933 1 170867761 to 170867784 23 - TSS region transcription start site region 14933
Tssr14934 1 170867789 to 170867800 11 - TSS region transcription start site region 14934
Tssr14935 1 170867803 to 170867814 11 - TSS region transcription start site region 14935
Tssr14936 1 170868605 to 170868639 34 - TSS region transcription start site region 14936
Gm9929 1 170868645 to 170881721 13076 + unclassified non-coding RNA gene predicted gene 9929
Cpgi998 1 170868661 to 170868991 330 CpG island CpG island 998
Tssr9934 1 170868676 to 170868707 31 + TSS region transcription start site region 9934
Tssr9935 1 170868708 to 170868720 12 + TSS region transcription start site region 9935
Dusp12 1 170874187 to 170885878 11691 - protein coding gene dual specificity phosphatase 12
Cpgi999 1 170884830 to 170885579 749 CpG island CpG island 999
Gm26620 1 170885065 to 170885881 816 + protein coding gene predicted gene, 26620
Tssr9936 1 170885083 to 170885098 15 + TSS region transcription start site region 9936
Tssr14937 1 170885142 to 170885198 56 - TSS region transcription start site region 14937
Opefa 1 170885284 to 170885284 0 QTL open field activity
Tssr14938 1 170885388 to 170885446 58 - TSS region transcription start site region 14938
Tssr14939 1 170885452 to 170885467 15 - TSS region transcription start site region 14939
Tssr14940 1 170906994 to 170906998 4 - TSS region transcription start site region 14940
Fcrlb 1 170907273 to 170912941 5668 - protein coding gene Fc receptor-like B
Cpgi1000 1 170907291 to 170908922 1631 CpG island CpG island 1000
Tssr14941 1 170913665 to 170913668 3 - TSS region transcription start site region 14941
Tssr14942 1 170913682 to 170913703 21 - TSS region transcription start site region 14942
Tssr14943 1 170913716 to 170913749 33 - TSS region transcription start site region 14943
Tssr14944 1 170913754 to 170913759 5 - TSS region transcription start site region 14944
Fcrla 1 170917594 to 170927583 9989 - protein coding gene Fc receptor-like A
Gm2962 1 170925309 to 170925644 335 - pseudogene predicted pseudogene 2962
Tssr14945 1 170925656 to 170925659 3 - TSS region transcription start site region 14945
Tssr14946 1 170927519 to 170927531 12 - TSS region transcription start site region 14946
Tssr14947 1 170927540 to 170927566 26 - TSS region transcription start site region 14947
Tssr14948 1 170927567 to 170927583 16 - TSS region transcription start site region 14948
Gm37030 1 170935771 to 170936065 294 + pseudogene predicted gene, 37030
Gm39701 1 170945108 to 170949763 4655 + protein coding gene predicted gene, 39701
Tssr14949 1 170958895 to 170958917 22 - TSS region transcription start site region 14949
Tssr14950 1 170959739 to 170959771 32 - TSS region transcription start site region 14950
Tssr14951 1 170959817 to 170959840 23 - TSS region transcription start site region 14951
Tssr284 1 170959894 to 170959899 5 - TSS region transcription start site region 284
Tssr14952 1 170960074 to 170960085 11 - TSS region transcription start site region 14952
Tssr14953 1 170960089 to 170960100 11 - TSS region transcription start site region 14953
Del(1Fcgr2b-Fcgr3)1Rav 1 170960558 to 171064935 104377 chromosomal deletion deletion, Chr 1, Jeffrey V Ravetch 1
Del(1Fcgr2b-Fcgr3)1Vlcg 1 170960558 to 171064935 104377 chromosomal deletion deletion, Chr1, Regeneron Pharmaceuticals
Fcgr2b 1 170960558 to 170976071 15513 - protein coding gene Fc receptor, IgG, low affinity IIb
Tssr14954 1 170960856 to 170960867 11 - TSS region transcription start site region 14954
Tssr14955 1 170961085 to 170961105 20 - TSS region transcription start site region 14955
D1Mit147 1 170964737 to 170965077 340 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 147
Tssr14956 1 170965795 to 170965811 16 - TSS region transcription start site region 14956
Tssr14957 1 170966485 to 170966523 38 - TSS region transcription start site region 14957
Tssr14958 1 170968204 to 170968225 21 - TSS region transcription start site region 14958
D1Dcr16 1 170969863 to 170969965 102 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 16
D1Mit148 1 170969883 to 170970001 118 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 148
Tssr14959 1 170971959 to 170971961 2 - TSS region transcription start site region 14959