Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:168924610-169590876

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nidd3k 1 147249520 to 169211344 21961824 QTL Nidd3 on KK-A
Cfcd 1 168000922 to 169211344 1210422 QTL contextual fear conditioning
D1Mit112 1 168964995 to 168965172 177 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 112
D1Mit111 1 169007542 to 169007711 169 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 111
Bmd5b 1 169007542 to 171938066 2930524 QTL bone mineral density 5b
Nba2 1 169007542 to 169007711 169 QTL New Zealand Black autoimmunity 2
Mir6354 1 169018974 to 169019089 115 - miRNA gene microRNA 6354
Tssr14888 1 169046869 to 169046878 9 - TSS region transcription start site region 14888
Tssr14889 1 169046891 to 169046896 5 - TSS region transcription start site region 14889
Tssr14890 1 169087599 to 169087601 2 - TSS region transcription start site region 14890
Gm39697 1 169128222 to 169172873 44651 - lncRNA gene predicted gene, 39697
Sle16 1 169211172 to 177550021 8338849 QTL systematic lupus erythematosus susceptibility 16
Lbw7 1 169211172 to 169211344 172 QTL lupus NZB x NZW 7
Sle1 1 169211172 to 169211344 172 QTL systemic lupus erythmatosus susceptibility 1
Bbaa30 1 169211172 to 174628870 5417698 QTL B.burgdorferi-associated arthritis 30
Cfmq1 1 169211172 to 169211344 172 QTL cystic fibrosis modifier QTL 1
Cgnz1 1 169211172 to 169211344 172 QTL chronic glomerulonephritis in NZM 1
D1Mit36 1 169211172 to 169211344 172 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 36
Lprq3 1 169211172 to 169211344 172 QTL lipoprotein QTL 3
D1Mit402 1 169251917 to 169252020 103 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 402
Gm34421 1 169254610 to 169260876 6266 + lncRNA gene predicted gene, 34421
Hdlq107 1 169305175 to 169305175 0 QTL HDL QTL 107
Ewc1 1 169305175 to 169305175 0 QTL ethanol withdrawal and consumption 1
Tcq11 1 169310000 to 179820000 10510000 QTL total cholesterol QTL 11
Gm37839 1 169328529 to 169347632 19103 - lincRNA gene predicted gene, 37839
Gm34477 1 169364509 to 169370283 5774 + lncRNA gene predicted gene, 34477
Gm5265 1 169453528 to 169453869 341 - pseudogene predicted pseudogene 5265
Gm34535 1 169462966 to 169470755 7789 + lncRNA gene predicted gene, 34535
Nuf2 1 169497934 to 169531464 33530 - protein coding gene NUF2, NDC80 kinetochore complex component
Cpgi989 1 169531199 to 169531707 508 CpG island CpG island 989
Tssr14891 1 169531343 to 169531437 94 - TSS region transcription start site region 14891
Tssr14892 1 169531447 to 169531460 13 - TSS region transcription start site region 14892
Gm34624 1 169531526 to 169542467 10941 + lncRNA gene predicted gene, 34624