Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:16494121-16664132

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stau2 1 16228803 to 16520182 291379 - protein coding gene staufen double-stranded RNA binding protein 2
Cpgi55 1 16518533 to 16520192 1659 CpG island CpG island 55
Tssr11038 1 16519201 to 16519260 59 - TSS region transcription start site region 11038
Tssr11039 1 16519284 to 16519336 52 - TSS region transcription start site region 11039
Tssr11040 1 16520023 to 16520039 16 - TSS region transcription start site region 11040
Tssr11041 1 16520067 to 16520095 28 - TSS region transcription start site region 11041
Tssr11042 1 16520106 to 16520133 27 - TSS region transcription start site region 11042
Ube2w 1 16540788 to 16619415 78627 - protein coding gene ubiquitin-conjugating enzyme E2W (putative)
Tssr11043 1 16579121 to 16579132 11 - TSS region transcription start site region 11043
Gm46084 1 16591021 to 16596309 5288 - protein coding gene predicted gene, 46084
2310047N11Rik 1 16604593 to 16604935 342 unclassified gene RIKEN cDNA 2310047N11 gene
Tssr11044 1 16615502 to 16615506 4 - TSS region transcription start site region 11044
Cpgi56 1 16618471 to 16619580 1109 CpG island CpG island 56
Gm38342 1 16618560 to 16621539 2979 + unclassified gene predicted gene, 38342
Tssr6000 1 16618773 to 16618785 12 + TSS region transcription start site region 6000
Tssr11045 1 16619245 to 16619302 57 - TSS region transcription start site region 11045
Tssr11046 1 16619303 to 16619314 11 - TSS region transcription start site region 11046
Tssr11047 1 16619437 to 16619446 9 - TSS region transcription start site region 11047
Tssr6001 1 16619468 to 16619498 30 + TSS region transcription start site region 6001
Eloc 1 16641725 to 16657042 15317 - protein coding gene elongin C
Tssr11048 1 16645801 to 16645828 27 - TSS region transcription start site region 11048
Tssr11049 1 16655489 to 16655528 39 - TSS region transcription start site region 11049
Cpgi57 1 16656447 to 16657229 782 CpG island CpG island 57
Tssr11050 1 16656843 to 16656897 54 - TSS region transcription start site region 11050
Tssr11051 1 16656908 to 16656922 14 - TSS region transcription start site region 11051
Tssr6002 1 16656979 to 16656984 5 + TSS region transcription start site region 6002
Tssr11052 1 16657033 to 16657049 16 - TSS region transcription start site region 11052
D030040B21Rik 1 16657552 to 16662278 4726 + lincRNA gene RIKEN cDNA D030040B21 gene
Tssr6003 1 16661532 to 16661545 13 + TSS region transcription start site region 6003
Tssr6004 1 16661568 to 16661574 6 + TSS region transcription start site region 6004
Tssr13 1 16661608 to 16661615 7 + TSS region transcription start site region 13
Gm7654 1 16662980 to 16663662 682 - pseudogene predicted gene 7654