Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:162551348-164061466

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188 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi932 1 162570262 to 162571613 1351 CpG island CpG island 932
Tssr14622 1 162570282 to 162570322 40 - TSS region transcription start site region 14622
Vamp4 1 162570515 to 162599084 28569 + protein coding gene vesicle-associated membrane protein 4
Tssr9715 1 162570597 to 162570656 59 + TSS region transcription start site region 9715
Tssr9716 1 162570667 to 162570672 5 + TSS region transcription start site region 9716
Tssr9717 1 162570687 to 162570755 68 + TSS region transcription start site region 9717
Tssr14623 1 162571349 to 162571365 16 - TSS region transcription start site region 14623
Tssr14624 1 162571368 to 162571375 7 - TSS region transcription start site region 14624
Tssr14625 1 162571395 to 162571408 13 - TSS region transcription start site region 14625
Tssr14626 1 162571433 to 162571442 9 - TSS region transcription start site region 14626
Tssr14627 1 162571473 to 162571487 14 - TSS region transcription start site region 14627
Tssr14628 1 162571494 to 162571505 11 - TSS region transcription start site region 14628
Tssr14629 1 162571539 to 162571540 1 - TSS region transcription start site region 14629
Tssr9718 1 162571628 to 162571641 13 + TSS region transcription start site region 9718
Tssr9719 1 162581807 to 162581839 32 + TSS region transcription start site region 9719
Tssr9720 1 162588206 to 162588217 11 + TSS region transcription start site region 9720
D1Mit399 1 162614243 to 162614380 137 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 399
Gm5705 1 162628357 to 162629067 710 - pseudogene predicted gene 5705
Tssr9721 1 162639148 to 162639158 10 + TSS region transcription start site region 9721
Myoc 1 162639155 to 162649693 10538 + protein coding gene myocilin
Myocos 1 162647193 to 162658219 11026 - protein coding gene myocilin opposite strand
Cpgi933 1 162648777 to 162649055 278 CpG island CpG island 933
Prrc2c 1 162671785 to 162740570 68785 - protein coding gene proline-rich coiled-coil 2C
Tssr14630 1 162672149 to 162672152 3 - TSS region transcription start site region 14630
Gm27616 1 162674158 to 162674220 62 - miRNA gene predicted gene, 27616
Tssr14631 1 162675209 to 162675213 4 - TSS region transcription start site region 14631
Tssr14632 1 162675487 to 162675542 55 - TSS region transcription start site region 14632
Tssr14633 1 162675877 to 162675881 4 - TSS region transcription start site region 14633
Tssr14634 1 162688172 to 162688187 15 - TSS region transcription start site region 14634
Tssr14635 1 162692404 to 162692437 33 - TSS region transcription start site region 14635
Tssr14636 1 162692825 to 162692838 13 - TSS region transcription start site region 14636
Tssr14637 1 162702208 to 162702231 23 - TSS region transcription start site region 14637
Tssr14638 1 162702235 to 162702246 11 - TSS region transcription start site region 14638
Tssr14639 1 162702252 to 162702266 14 - TSS region transcription start site region 14639
Tssr14640 1 162705544 to 162705564 20 - TSS region transcription start site region 14640
Tssr14641 1 162706130 to 162706145 15 - TSS region transcription start site region 14641
Tssr14642 1 162706177 to 162706191 14 - TSS region transcription start site region 14642
Tssr14643 1 162707828 to 162707843 15 - TSS region transcription start site region 14643
Tssr14644 1 162709588 to 162709604 16 - TSS region transcription start site region 14644
Tssr9722 1 162710345 to 162710505 160 + TSS region transcription start site region 9722
Tssr14645 1 162710416 to 162710428 12 - TSS region transcription start site region 14645
Tssr14646 1 162710458 to 162710482 24 - TSS region transcription start site region 14646
Tssr14647 1 162710502 to 162710515 13 - TSS region transcription start site region 14647
Tssr14648 1 162710751 to 162710801 50 - TSS region transcription start site region 14648
Tssr14649 1 162713341 to 162713360 19 - TSS region transcription start site region 14649
Tssr14650 1 162714376 to 162714384 8 - TSS region transcription start site region 14650
Tssr14651 1 162715456 to 162715484 28 - TSS region transcription start site region 14651
Tssr14652 1 162715694 to 162715712 18 - TSS region transcription start site region 14652
Tssr14653 1 162724764 to 162724780 16 - TSS region transcription start site region 14653
Tssr14654 1 162724789 to 162724813 24 - TSS region transcription start site region 14654
Tssr14655 1 162724824 to 162724857 33 - TSS region transcription start site region 14655
D1Ertd646e 1 162726290 to 162726489 199 DNA segment DNA segment, Chr 1, ERATO Doi 646, expressed
Cpgi934 1 162739784 to 162740806 1022 CpG island CpG island 934
Tssr14656 1 162740491 to 162740533 42 - TSS region transcription start site region 14656
Tssr14657 1 162740540 to 162740551 11 - TSS region transcription start site region 14657
Fmo4 1 162793188 to 162813972 20784 - protein coding gene flavin containing monooxygenase 4
D1Ertd532e 1 162812817 to 162813066 249 DNA segment DNA segment, Chr 1, ERATO Doi 532, expressed
Tssr14658 1 162813243 to 162813291 48 - TSS region transcription start site region 14658
Tssr14659 1 162813873 to 162813883 10 - TSS region transcription start site region 14659
Tssr14660 1 162813942 to 162813953 11 - TSS region transcription start site region 14660
Fmo1 1 162829561 to 162866548 36987 - protein coding gene flavin containing monooxygenase 1
Tssr14661 1 162834303 to 162834307 4 - TSS region transcription start site region 14661
Tssr9723 1 162857242 to 162857248 6 + TSS region transcription start site region 9723
Tssr14662 1 162859556 to 162859572 16 - TSS region transcription start site region 14662
Tssr14663 1 162859684 to 162859735 51 - TSS region transcription start site region 14663
Tssr14664 1 162859811 to 162859825 14 - TSS region transcription start site region 14664
Tssr14665 1 162859831 to 162859842 11 - TSS region transcription start site region 14665
Tssr14666 1 162859872 to 162859883 11 - TSS region transcription start site region 14666
Tssr14667 1 162859919 to 162859973 54 - TSS region transcription start site region 14667
Tssr14668 1 162859984 to 162859994 10 - TSS region transcription start site region 14668
Tssr14669 1 162860060 to 162860077 17 - TSS region transcription start site region 14669
Tssr14670 1 162860079 to 162860094 15 - TSS region transcription start site region 14670
Tssr14671 1 162860097 to 162860108 11 - TSS region transcription start site region 14671
Tssr14672 1 162860114 to 162860126 12 - TSS region transcription start site region 14672
Tssr14673 1 162866359 to 162866402 43 - TSS region transcription start site region 14673
Tssr14674 1 162866425 to 162866432 7 - TSS region transcription start site region 14674
Tssr14675 1 162866440 to 162866451 11 - TSS region transcription start site region 14675
Tssr14676 1 162866463 to 162866468 5 - TSS region transcription start site region 14676
Tssr14677 1 162866483 to 162866501 18 - TSS region transcription start site region 14677
Tssr14678 1 162866502 to 162866616 114 - TSS region transcription start site region 14678
Gm32197 1 162872700 to 162873622 922 + lncRNA gene predicted gene, 32197
Fmo2 1 162874321 to 162898712 24391 - protein coding gene flavin containing monooxygenase 2
Tssr14679 1 162875383 to 162875393 10 - TSS region transcription start site region 14679
Tssr14680 1 162881561 to 162881565 4 - TSS region transcription start site region 14680
Tssr14681 1 162886469 to 162886491 22 - TSS region transcription start site region 14681
Tssr14682 1 162886499 to 162886502 3 - TSS region transcription start site region 14682
Tssr14683 1 162886512 to 162886537 25 - TSS region transcription start site region 14683
Tssr14684 1 162898317 to 162898328 11 - TSS region transcription start site region 14684
Tssr14685 1 162898330 to 162898342 12 - TSS region transcription start site region 14685
Tssr14686 1 162898349 to 162898368 19 - TSS region transcription start site region 14686
Tssr14687 1 162898376 to 162898393 17 - TSS region transcription start site region 14687
Tssr14688 1 162898395 to 162898456 61 - TSS region transcription start site region 14688
Tssr14689 1 162898485 to 162898498 13 - TSS region transcription start site region 14689
Tssr14690 1 162898711 to 162898728 17 - TSS region transcription start site region 14690
Tssr14691 1 162898755 to 162898760 5 - TSS region transcription start site region 14691
Fmo6 1 162916551 to 162937515 20964 - protein coding gene flavin containing monooxygenase 6
Gm32279 1 162933618 to 162937060 3442 + lncRNA gene predicted gene, 32279
Tssr14692 1 162937525 to 162937555 30 - TSS region transcription start site region 14692
Fmo3 1 162953800 to 162984528 30728 - protein coding gene flavin containing monooxygenase 3
Gm37273 1 162983014 to 163066682 83668 + antisense lncRNA gene predicted gene, 37273
Tssr9724 1 162983054 to 162983056 2 + TSS region transcription start site region 9724
Tssr14693 1 162984519 to 162984533 14 - TSS region transcription start site region 14693
Gm18450 1 163022598 to 163023426 828 + pseudogene predicted gene, 18450
Mroh9 1 163024302 to 163085670 61368 - protein coding gene maestro heat-like repeat family member 9
Gm22671 1 163054818 to 163054951 133 - snoRNA gene predicted gene, 22671
Tssr14694 1 163085643 to 163085674 31 - TSS region transcription start site region 14694
Gm37049 1 163108993 to 163110975 1982 + unclassified gene predicted gene, 37049
Gm22434 1 163118227 to 163118348 121 + snoRNA gene predicted gene, 22434
D1Mit314 1 163125921 to 163126036 115 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 314
D1Mit452 1 163149528 to 163149625 97 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 452
Emo1 1 163149528 to 186261999 23112471 QTL emotionality 1
Prrx1 1 163245119 to 163313705 68586 - protein coding gene paired related homeobox 1
Gm20471 1 163280356 to 163287045 6689 + antisense lncRNA gene predicted gene 20471
Tssr14695 1 163289214 to 163289235 21 - TSS region transcription start site region 14695
Tssr14696 1 163289322 to 163289338 16 - TSS region transcription start site region 14696
Gm26523 1 163301790 to 163303620 1830 - lincRNA gene predicted gene, 26523
Tssr14697 1 163304517 to 163304520 3 - TSS region transcription start site region 14697
D1Mit506 1 163306348 to 163306466 118 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 506
Gm37644 1 163306798 to 163309067 2269 - unclassified gene predicted gene, 37644
Cpgi935 1 163308746 to 163308926 180 CpG island CpG island 935
Cpgi936 1 163311774 to 163312713 939 CpG island CpG island 936
Tssr14698 1 163312420 to 163312423 3 - TSS region transcription start site region 14698
Tssr14699 1 163312521 to 163312543 22 - TSS region transcription start site region 14699
Tssr14700 1 163312570 to 163312585 15 - TSS region transcription start site region 14700
Tssr14701 1 163312595 to 163312645 50 - TSS region transcription start site region 14701
Tssr14702 1 163312707 to 163312732 25 - TSS region transcription start site region 14702
Tssr14703 1 163312949 to 163312953 4 - TSS region transcription start site region 14703
Tssr14704 1 163313005 to 163313006 1 - TSS region transcription start site region 14704
Tssr262 1 163313018 to 163313023 5 - TSS region transcription start site region 262
Tssr14705 1 163313066 to 163313076 10 - TSS region transcription start site region 14705
Tssr14706 1 163313141 to 163313152 11 - TSS region transcription start site region 14706
Tssr14707 1 163313248 to 163313271 23 - TSS region transcription start site region 14707
Tssr14708 1 163313460 to 163313494 34 - TSS region transcription start site region 14708
Tssr14709 1 163313507 to 163313518 11 - TSS region transcription start site region 14709
Tssr14710 1 163313522 to 163313533 11 - TSS region transcription start site region 14710
Tssr14711 1 163313661 to 163313677 16 - TSS region transcription start site region 14711
Tssr14712 1 163313693 to 163313696 3 - TSS region transcription start site region 14712
Tssr263 1 163313709 to 163313712 3 - TSS region transcription start site region 263
Tssr14713 1 163313847 to 163313861 14 - TSS region transcription start site region 14713
Tssr14714 1 163314113 to 163314123 10 - TSS region transcription start site region 14714
Tssr14715 1 163314438 to 163314464 26 - TSS region transcription start site region 14715
Cpgi937 1 163314999 to 163315266 267 CpG island CpG island 937
Tssr9725 1 163358382 to 163358387 5 + TSS region transcription start site region 9725
Gorab 1 163384908 to 163403669 18761 - protein coding gene golgin, RAB6-interacting
Gm24940 1 163402283 to 163402390 107 + snRNA gene predicted gene, 24940
Cpgi938 1 163403462 to 163404008 546 CpG island CpG island 938
Tssr14716 1 163403604 to 163403619 15 - TSS region transcription start site region 14716
Tssr14717 1 163403627 to 163403679 52 - TSS region transcription start site region 14717
D1Mit143 1 163500821 to 163501011 190 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 143
Gm32333 1 163537734 to 163617907 80173 - lncRNA gene predicted gene, 32333
Gm39689 1 163579301 to 163592668 13367 + lncRNA gene predicted gene, 39689
Gm29500 1 163607377 to 163610269 2892 + lincRNA gene predicted gene 29500
Rpsa-ps1 1 163623793 to 163624678 885 + pseudogene ribosomal protein SA, pseudogene 1
Mettl11b 1 163702993 to 163725232 22239 - protein coding gene methyltransferase like 11B
Tssr14718 1 163725123 to 163725136 13 - TSS region transcription start site region 14718
Gm2343 1 163729571 to 163730612 1041 + pseudogene predicted gene 2343
Tssr9726 1 163762125 to 163762126 1 + TSS region transcription start site region 9726
Tssr9727 1 163762129 to 163762153 24 + TSS region transcription start site region 9727
Tssr9728 1 163762159 to 163762174 15 + TSS region transcription start site region 9728
Tssr9729 1 163762176 to 163762198 22 + TSS region transcription start site region 9729
Tssr9730 1 163762202 to 163762207 5 + TSS region transcription start site region 9730
Cpgi939 1 163779375 to 163780054 679 CpG island CpG island 939
Tssr9731 1 163779559 to 163779570 11 + TSS region transcription start site region 9731
Tssr9732 1 163779575 to 163779592 17 + TSS region transcription start site region 9732
Kifap3 1 163779583 to 163917109 137526 + protein coding gene kinesin-associated protein 3
Tssr9733 1 163779594 to 163779631 37 + TSS region transcription start site region 9733
Tssr9734 1 163779635 to 163779705 70 + TSS region transcription start site region 9734
Tssr9735 1 163779709 to 163779744 35 + TSS region transcription start site region 9735
Tssr9736 1 163779745 to 163779763 18 + TSS region transcription start site region 9736
Tssr9737 1 163779811 to 163779865 54 + TSS region transcription start site region 9737
Tssr264 1 163887821 to 163887832 11 + TSS region transcription start site region 264
Tssr9738 1 163903683 to 163903688 5 + TSS region transcription start site region 9738
Scyl3 1 163929100 to 163955126 26026 + protein coding gene SCY1-like 3 (S. cerevisiae)
Cpgi940 1 163929678 to 163930762 1084 CpG island CpG island 940
Tssr9739 1 163929778 to 163929809 31 + TSS region transcription start site region 9739
Tssr9740 1 163930005 to 163930077 72 + TSS region transcription start site region 9740
BC055324 1 163945993 to 163994796 48803 - protein coding gene cDNA sequence BC055324
Cpgi941 1 163994265 to 163995222 957 CpG island CpG island 941
Tssr14719 1 163994737 to 163994765 28 - TSS region transcription start site region 14719
Tssr14720 1 163994767 to 163994808 41 - TSS region transcription start site region 14720
Tssr9741 1 163994866 to 163994904 38 + TSS region transcription start site region 9741
Mettl18 1 163994891 to 163997243 2352 + protein coding gene methyltransferase like 18
Tssr9742 1 163994924 to 163994935 11 + TSS region transcription start site region 9742
Tssr14721 1 164020988 to 164021012 24 - TSS region transcription start site region 14721
Gm37119 1 164031960 to 164032348 388 + pseudogene predicted gene, 37119
Tssr265 1 164039831 to 164039838 7 + TSS region transcription start site region 265
Tssr9743 1 164048214 to 164048216 2 + TSS region transcription start site region 9743
Sele 1 164048234 to 164057677 9443 + protein coding gene selectin, endothelial cell